BAC Information

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BAC

Clone NameMSMg01-350M21
Chromosome4 (Build37)
Map Location 134,152,703 - 134,300,139
singlet/doubletdoublet
Overlap geneMan1c1
Upstream geneSfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350M21.T7 (MSMg01no350_m21.b1)MSMg01-350M21.TJ (MSMg01no350_m21.g1)
ACCAG462329AG462330
length800753
length of high quality
(start - end)		250 (77 - 326)423 (82 - 504)
definitionCHROMAT_FILE: MSMg01no350_m21.b1 PHD_FILE: MSMg01no350_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:51 2005CHROMAT_FILE: MSMg01no350_m21.g1 PHD_FILE: MSMg01no350_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,152,703 - 134,152,952)(134,299,717 - 134,300,139)
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATC
CGCGGAATTCTCTGCCCTTGCGGCCTTAACTGCTTACTTGTGCTGGCAGT
GCCCATGGAGAACCCTGAACTGGATCATGGGAAGGCGTGGTGTGATACAG
GCACAGCCTGAAAAAGAACTAGAGAGAAGAAGAGCGAGGGAGGAGTGGGG
TAAAGGCAGGGACAGCTGTTACAGGCATATCACAGAAGGGAGGGCTGGCC
ACAGAGGAAGGTGTGCATCTGGGTGCTTGGACTAGGGCTTAAGCTGGCGT
GGAGCGTGTCTGCCCCTCCCACAGCCTTTATGCTTTGTCAGGTATTCCTT
TCCCGGCCACCTCCCTTCTAAAAGGCGCCAGGGCAGGCAAGGTTCCAGCA
AGGCCCCACACTGAAGGACCTGGTGACATGGGGCCCTGTGTTTGAAGGGT
CTGGAGGGACTCTGAGGTCCTTCTAGGTCACTCATTCATCTCACAGATGA
GGCCCTATCAAGGACTAAGCCAGCCCCGGGGTGATAAGCTTTCCCTGCCC
CGGGTGGCCTCTCCTCTTCTGATCAAAGGGACCTATCCGTTCCACCCACC
TTAAAATCCTAATTCCAGGCCAGGAATGGGTAGGTAAGGTTCTNCTTTTT
CCCCCCTTGCCACGTGTTTGAGGCCTTTATATTTTTATTTTTTCGCTCCG
GGGCACCCGGGNGCTCCTCCTCGGTGTCTCTGCTTCTTTGGAGGTCATAT
CCGTCCCTCCTTTTCCCTCTCTTTTTCTCTTGATCTCTCTTTCCATTTCC


NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTTTTCCCCCATAA
TTTGAAAAGACACTCAACAAGCTCATCTTTCGGTTTAAATTTGGCCAACG
CCTTTAGTCTCCGGATGTCTCAAATTATGGATCCTGAGCGCAGCCGTCTG
CTCTTTCATGCATAACAGGCATAGTGAAAGAACAAAGCTGCCTTTCAGAC
TTGATGTGACCTTCAGCTTCTCTGGGTGCATGTTGGGCTGGCTCTCCAGG
AGACGCTGTCACAATTACACCTTGCAGAGGGGCTTCCCAGCTTCCGTGCC
TGGGACAGGCTGGAGACTGGGCTTCCCCTGCCTGGTGCAGCAGAACAGGC
AACCTGCTTGGCTAGTAGGAAGGACTACTAACCTTGTCAGGACCCTTGTG
CCCAGCCTTGGCGAGATCAGTCTGCTGTGGCACACTGGGAGGTGGGTGGT
AGTAGTAGTAGGTAGTCTTCTTCTTATTTTCCCCTCGTCGCTTTTTTTAT
AACTTTTCTCCTTCCCTTTATTTATAATTCTTTTTCATATTTTTATATCC
ATCATTTACTCTCATTTTTCCCAGCACCCCATTACCCCTCCCTATTTTCT
ATCCATCTCTTTCCTTTTACTTCTTAATACGACCTATCTTCCCTTTTCTC
CCCTCTTCCTTACGCCCGATACATTTTCCGCCCTATCTCTTTCTCTCTTT
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_m21.b1 MSMg01no350_m21.b1 CHROMAT_FILE:
MSMg01no350_m21.b1 PHD_FILE: MSMg01no350_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:51 2005
         (250 letters)



>mm_chr4_134152503_134153152
          Length = 650

 Score =  445 bits (230), Expect = e-129
 Identities = 245/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taactgcttacttgtgctggcagtgcccatggagaaccctgaactggatcatgggaaggc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactgctcacttgtgctggcagtgcccatggagaaccctgaactggatcatgggaaggc 260

                                                                       
Query: 61  gtggtgtgatacaggcacagcctgaaaaagaactagagagaagaagagcgagggaggagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gtggtgtgatacaggcacagcctgaaaaagaactagagagaagaagagggagggaggagt 320

                                                                       
Query: 121 ggggtaaaggcagggacagctgttacaggcatatcacagaagggagggctggccacagag 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ggggtaaaggcagggacagctgttacgggcatatcacagaagggagggctggccacagag 380

                                                                       
Query: 181 gaaggtgtgcatctgggtgcttggactagggcttaagctggcgtggagcgtgtctgcccc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gaaggggtgcatctgggtgcttggactagggcttaagctggcgtggagcttgtctgcccc 440

                     
Query: 241 tcccacagcc 250
           ||||||||||
Sbjct: 441 tcccacagcc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no350_m21.g1 MSMg01no350_m21.g1 CHROMAT_FILE:
MSMg01no350_m21.g1 PHD_FILE: MSMg01no350_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:51 2005
         (423 letters)



>mm_chr4_134299517_134300339
          Length = 823

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcttttttcccccataatttgaaaagacactcaacaagctcatctttcggtttaaatt 60
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 623 cttcctttttcccccataatttgaaaagacacccaacaagctcatctttcggtttaaatt 564

                                                                       
Query: 61  tggccaacgcctttagtctccggatgtctcaaattatggatcctgagcgcagccgtctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tggccaacgcctttagtctccggatgtctcaaattatggatcctgagcgcagccgtctgc 504

                                                                       
Query: 121 tctttcatgcataacaggcatagtgaaagaacaaagctgcctttcagacttgatgtgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctttcatgcataacaggcatagtgaaagaacaaagctgcctttcagacttgatgtgacc 444

                                                                       
Query: 181 ttcagcttctctgggtgcatgttgggctggctctccaggagacgctgtcacaattacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttcagcttctctgggtgcatgttgggctggctctccaggagacgctgtcacaattacacc 384

                                                                       
Query: 241 ttgcagaggggcttcccagcttccgtgcctgggacaggctggagactgggcttcccctgc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 383 ttgcagaggggcttcccagcttccgtgcctgggacaggctggagactgggtttaccctgc 324

                                                                       
Query: 301 ctggtgcagcagaacaggcaacctgcttggctagtaggaaggactactaaccttgtcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctggtgcagcagaacaggcaacctgcttggctagtaggaaggactactaaccttgtcagg 264

                                                                       
Query: 361 acccttgtgcccagccttggcgagatcagtctgctgtggcacactgggaggtgggtggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acccttgtgcccagccttggcgagatcagtctgctgtggcacactgggaggtgggtggta 204

              
Query: 421 gta 423
           |||
Sbjct: 203 gta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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