BAC Information

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BAC

Clone NameMSMg01-350M23
Chromosome4 (Build37)
Map Location 48,880,434 - 48,880,844
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350M23.T7 (MSMg01no350_m23.b1)MSMg01-350M23.TJ (MSMg01no350_m23.g1)
ACCAG462333AG462334
length779780
length of high quality
(start - end)
249 (77 - 325)411 (81 - 491)
definitionCHROMAT_FILE: MSMg01no350_m23.b1 PHD_FILE: MSMg01no350_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:52 2005CHROMAT_FILE: MSMg01no350_m23.g1 PHD_FILE: MSMg01no350_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAAT
CCGCGGAATTCCCACTGTTTTCATTATTATGGAGGATTTATTCCCAAGAC
CTGCTGCTAGAAGAGAACAGGAATGATTTTCTTTGATTTCAGTTGTGCTG
TGCACTTTGTCAAATTAGGTCCTTCGGTCAGACTTCAGCAGTGGCTCTCA
ACCTTCCTGATGCTGTGACCCTTTAATGTAGTCCCTCATGCTGTGGTGAC
CCCCAGTTATCAAATTATTTTTGCATGGTTGTTGCTACTTCGTAACTGTA
ATTTTTCCACTGTTATGAATTGCAATGTTTATATCTGATATTTCTGACGA
TCTTAGGTGATCCCTATAAAAGGCTTGTTGGACTCTAAAGGGGTCACAAT
CCTAGGCTGAGAACCACTGCTTTAGAGAAACGTAAATACAGGATATATCT
GCTGTGATTTGAACGTGGAATGTTCATCATAGGCTCATGTGTTTACAAAC
TTGGACCCCACCGGGTGGTAGCATTTTTGGGAAGAGGTGGAAGCTTGCTG
GATGAAGTGGCCCCAGGGTTTGGTCCCTGAGGGTTTTTTTTTTTAATTTT
TCAACCAATTTTTTTATCAAAAATTTTTCCCCACTTTACATTTTCAAAAG
GTATCCCCCAAAAGGCCTTTTTTTTTCTTCCTCTCCCCCCGGGTTCCTCC
TAATCCCCCCTTTTATTTGTTTTCTTGTCCCCTTGCGTTTTCTCCTTGCC
TTAAGGCTTTTATACATTTTCTGTCTCAN
NNNNNCCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGTGAGAAGTCTCAGTG
GGTCAGGAGGCTGCCTCCAAGACTCAGGACCTAAGTTCAGTTCCAGGAAT
CCACATGGCAGAGGGAAAAACTGACTCCCTCAAGTTGTTTTCTGCCCTTT
TCACATGTACTGTGGCATGTGTGTGCCATGGCATGTGCCATGGCATGTGC
AAACACATGAACACATACAATAAATAAAGTTTAAGAAGAATAGTCAAATA
CACTCAGACATGGGATTGTGACAAAGGAGACTTCTATGTCTATGTCTAAC
TCACAATGGAATTCTATTCTGTTCACATATGCATATACATATACAATTTG
TTAGCATTGTAGAGTATAGAATGCTTGCAAAAATAGCACTGTACAATGAA
ATAAATTGAAGGATTTCATTCACATTTGTAACATATGTTTAATAGNTCTC
CTTTCTTTGGNATTGTTACTTTCCCCAAGAAAAGCCTGGAAAGTTTGTCA
CTACAAGGTGGAAAGTGGCATGAAAAAGTGGCCTTCTGTATTAAGCCCGG
CTCTGGATAAAGGGCCCCTGTTTTCTCCATTGTAACAATTTTTTAAAAAA
ACCCAAATTTTTTCTCCGGGGTTAAAAACAAACAAGGTTGCCAAAAGAAA
AATTGTTCCCGCAAAAAATTTGTGGTTACATAAAAAAAAAATTCCCCTCA
AGGGGGAAGGAGTTTTTACAACCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_m23.g1 MSMg01no350_m23.g1 CHROMAT_FILE:
MSMg01no350_m23.g1 PHD_FILE: MSMg01no350_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:52 2005
         (411 letters)



>mm_chr4_48880091_48880901
          Length = 811

 Score =  795 bits (411), Expect = 0.0
 Identities = 411/411 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgtgagaagtctcagtgggtcaggaggctgcctccaagactcaggacctaagttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 agatgtgagaagtctcagtgggtcaggaggctgcctccaagactcaggacctaagttcag 695

                                                                       
Query: 61  ttccaggaatccacatggcagagggaaaaactgactccctcaagttgttttctgcccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttccaggaatccacatggcagagggaaaaactgactccctcaagttgttttctgcccttt 635

                                                                       
Query: 121 tcacatgtactgtggcatgtgtgtgccatggcatgtgccatggcatgtgcaaacacatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcacatgtactgtggcatgtgtgtgccatggcatgtgccatggcatgtgcaaacacatga 575

                                                                       
Query: 181 acacatacaataaataaagtttaagaagaatagtcaaatacactcagacatgggattgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 acacatacaataaataaagtttaagaagaatagtcaaatacactcagacatgggattgtg 515

                                                                       
Query: 241 acaaaggagacttctatgtctatgtctaactcacaatggaattctattctgttcacatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acaaaggagacttctatgtctatgtctaactcacaatggaattctattctgttcacatat 455

                                                                       
Query: 301 gcatatacatatacaatttgttagcattgtagagtatagaatgcttgcaaaaatagcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gcatatacatatacaatttgttagcattgtagagtatagaatgcttgcaaaaatagcact 395

                                                              
Query: 361 gtacaatgaaataaattgaaggatttcattcacatttgtaacatatgttta 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gtacaatgaaataaattgaaggatttcattcacatttgtaacatatgttta 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)