Query= MSMg01no351_c08.b1 MSMg01no351_c08.b1 CHROMAT_FILE:
MSMg01no351_c08.b1 PHD_FILE: MSMg01no351_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:19 2005
(638 letters)
>mm_chr4_26359052_26360089
Length = 1038
Score = 1187 bits (614), Expect = 0.0
Identities = 629/634 (99%)
Strand = Plus / Minus
Query: 5 gaattccttataatactaacaagtagttcatgttactagcattccattaatacctcatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gaattccttataatactaacaagtagttcatgttactagcattccattaatacctcatat 779
Query: 65 actaaaagatgtaacaataatatgatgtataatatatgtattcatatataagacatcata 124
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 778 actaaaagatgtaacaataatatgatgtataatatatgtattcatatataaggcatcata 719
Query: 125 taatatgatggctaataatatgatcctcaaaatgaatatgtttttttaaatcacaaattg 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 718 taatatgatggctaataatatgatcctcaaaatgaatatgattttttaaatcacaaattg 659
Query: 185 attttaacttcaaggagatggaaaagattataaaaattaaacacagctgcatagctctag 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 658 attttaacttcaaggagatggaaaagcttataaaaattaaacacagctgcatagctctag 599
Query: 245 taactttaaaaatagacaagtgataatttctcatggggaaaatgtgctactaataagaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 taactttaaaaatagacaagtgataatttctcatggggaaaatgtgctactaataagaaa 539
Query: 305 acacaaaagtctgtgaagtagggtgtgtaaaattaaattattggaggagcatactaccta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acacaaaagtctgtgaagtagggtgtgtaaaattaaattattggaggagcatactaccta 479
Query: 365 tgcttcattgaataggacatatttgccctgaaacaataattgagttattcttccctcttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgcttcattgaataggacatatttgccctgaaacaataattgagttattcttccctcttt 419
Query: 425 ataatatattagctatgtatctggagtgaagagaatcattgaatattttaggaaaatttc 484
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 418 ataatatattagctatgtatctggagtgaggagaatcattgaatattttaggaaaatttc 359
Query: 485 ttttgaaaatagttactttagatcgtggggttgaaatggcaagaaataacttgacattaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttttgaaaatagttactttagatcgtggggttgaaatggcaagaaataacttgacattaa 299
Query: 545 ctttatctgacatgggcttcttagaaaaatgcccagctaccaaaaatactcttcctttag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 298 ctttatctgacatgggcttcttagaaaaatgcccagctaccaaaaatactcttccgttag 239
Query: 605 aagaataaaagctaaaaaaggtgaggtttttctg 638
||||||||||||||||||||||||||||||||||
Sbjct: 238 aagaataaaagctaaaaaaggtgaggtttttctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_c08.g1 MSMg01no351_c08.g1 CHROMAT_FILE:
MSMg01no351_c08.g1 PHD_FILE: MSMg01no351_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:19 2005
(527 letters)
>mm_chr4_26192819_26193743
Length = 925
Score = 965 bits (499), Expect = 0.0
Identities = 520/527 (98%), Gaps = 2/527 (0%)
Strand = Plus / Plus
Query: 1 tttaacaaatatgtgcatgtgtgtgttaaaaatttttctcctaatttctgatttgtttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaacaaatatgtgcatgtgtgtgttaaaaatttttctcctaatttctgatttgtttgc 260
Query: 61 cactatttaataaggtctttcacagacaacaacaatcaaaataaagtttatctcttgaat 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattatttaataaggtctttcacagacaacaacaatcaaaataaagtttatctcttgaat 320
Query: 121 ttttttcataaatagtgtttttagttttccatttgaaacttaactactaaagtcaagacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttcataaatagtgtttttagttttccatttgaaacttaactactaaagtcaagacc 380
Query: 181 tcctcaactttctcatgtattttcttctgaaatgttttaaagtttaacttatatctagga 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tcctcaactttctcatgtattttcttatgaaatgttttaaagtttaacttatatctagga 440
Query: 241 tatttattgttatgatgttacacatcagtttgttgtatgtttttcttcctacctttcata 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttattgttatgatgttaca-atcagtttgttgtatgtttttcttcctacctttcata 499
Query: 301 atccttctctagatttttcaggaccagggatgcatctggcaggagaagagctattctctg 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atccttctctagatttt-caggaccagggatgcatctggcaggagaagagctattctctg 558
Query: 361 ctctgtctagaatgaatgattatggcaagactaaaaggataacatttccatttttacagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctctgtctagaatgaatgattatggcaagactaaaaggataacatttccatttttacagt 618
Query: 421 gaatctggtaacttccagggccaagcttcatcttggtaatttggagccttagagttccct 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 619 gaatctggtaacttccagggccaagcttcatcttgataatttggagccttagagttccct 678
Query: 481 tatcagatacttgctatgtatcagggtacaattacctctggatccct 527
||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 679 tatcagatacttgctatatctcagggtacaattacctctggatccct 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 925
Length adjustment: 10
Effective length of query: 517
Effective length of database: 915
Effective search space: 473055
Effective search space used: 473055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
