Query= MSMg01no351_c22.b1 MSMg01no351_c22.b1 CHROMAT_FILE:
MSMg01no351_c22.b1 PHD_FILE: MSMg01no351_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:22 2005
(432 letters)
>mm_chr4_77087363_77088198
Length = 836
Score = 816 bits (422), Expect = 0.0
Identities = 428/432 (99%), Gaps = 4/432 (0%)
Strand = Plus / Plus
Query: 5 gaattcataggattacaatgtctttgacatgaaacctaagggtttagtctccattacttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataggattacaatgtctttgacatgaaacctaagggtttagtctccattacttt 264
Query: 65 aggatcattcctgtcatctaaagcttatgatgttcctgatatggacccttttctcatttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggatcattcctgtcatctaaagcttatgatgttcctgatatggacccttttctcatttg 324
Query: 125 cctggaagaactgttcattgtttgattaagaatcacatttctcctttctcacaagagtta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctggaagaactgttcattgtttgattaagaatcacatttctcctttctcacaagagtta 384
Query: 185 ccttggaagaaaaagccaataatgcacacatttctttccacctgcttgttttttt----g 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 ccttggaagaaaaagccaataatgcacacatttctttccacctgcttgtttttttttttg 444
Query: 241 ttgatagatcttagtttaaattgaagagctgaattcaaggtgaaatattttgtccatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgatagatcttagtttaaattgaagagctgaattcaaggtgaaatattttgtccatgga 504
Query: 301 tacagtagatgagctcctccttgctttgttccttaacaacaggtgggaatatatttcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacagtagatgagctcctccttgctttgttccttaacaacaggtgggaatatatttcaat 564
Query: 361 aggactgaaagtattgacataagtttactgatgagaatttctcaacttatgttaatttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggactgaaagtattgacataagtttactgatgagaatttctcaacttatgttaatttgg 624
Query: 421 acttctatgtgt 432
||||||||||||
Sbjct: 625 acttctatgtgt 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 836
Length adjustment: 9
Effective length of query: 423
Effective length of database: 827
Effective search space: 349821
Effective search space used: 349821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_c22.g1 MSMg01no351_c22.g1 CHROMAT_FILE:
MSMg01no351_c22.g1 PHD_FILE: MSMg01no351_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:22 2005
(420 letters)
>mm_chr4_77278029_77278848
Length = 820
Score = 804 bits (416), Expect = 0.0
Identities = 419/420 (99%)
Strand = Plus / Minus
Query: 1 agaaaatcaaaaacagattttcaaatcttatgcataaaatccatagcatgttttaatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 620 agaaaatcaaaaacagattttcaaatcttatgcataaaatccatagcatgttttaataaa 561
Query: 61 tggcattatctcaatggaaagaaagtggttttatagtcactcaagaaattattgtcctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggcattatctcaatggaaagaaagtggttttatagtcactcaagaaattattgtcctgt 501
Query: 121 acgatggcagtatagaacagagaaatatctaagaactttgaataatctttcactattatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acgatggcagtatagaacagagaaatatctaagaactttgaataatctttcactattatg 441
Query: 181 ggctttactaccttacattaaataacaaaaagagagtcaccttttgactgtgatctatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggctttactaccttacattaaataacaaaaagagagtcaccttttgactgtgatctatta 381
Query: 241 acaataatttattaaattcattggtctgtaaatgctcctaggcttcctcagtgatttact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acaataatttattaaattcattggtctgtaaatgctcctaggcttcctcagtgatttact 321
Query: 301 cacttagatgtgccgcacataatcctcaaatgtgtggattaaaattttcccattttcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cacttagatgtgccgcacataatcctcaaatgtgtggattaaaattttcccattttcttc 261
Query: 361 cccaggggaaccttgaggagttgcacactttccatccccagtcactgctccccttcgggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cccaggggaaccttgaggagttgcacactttccatccccagtcactgctccccttcgggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
