BAC Information

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BAC

Clone NameMSMg01-351O10
Chromosome4 (Build37)
Map Location 83,475,399 - 83,643,398
singlet/doubletdoublet
Overlap gene4930473A06Rik
Upstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
Downstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351O10.T7 (MSMg01no351_o10.b1)MSMg01-351O10.TJ (MSMg01no351_o10.g1)
ACCAG463160AG463161
length742730
length of high quality
(start - end)
325 (55 - 379)437 (84 - 520)
definitionCHROMAT_FILE: MSMg01no351_o10.b1 PHD_FILE: MSMg01no351_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:15 2005CHROMAT_FILE: MSMg01no351_o10.g1 PHD_FILE: MSMg01no351_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,643,078 - 83,643,398)(83,475,399 - 83,475,835)
sequence
GGGGGTCGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCCTGATTCGTAAGGACTTTCTGTGCATGCATATCC
TGAAGATTAGCTCATTCATTTCCTTTGGAACTGTTCATAGTGGGCCTTGC
TGTAGGAGAAGTTAGGCCTAGGATGCCCCTCAAAGCTCTCAGCTCCTCCA
GCAGATGCTGGCCCATGAGGCCTGGCTGCTGCTCTCCTGTCTCTGTGAGC
CCCTCTGGCAAGCATGCTCAGGGAGGCCTTCACTTCCCTTTTTTTCAAGA
CCAAAGGTCACCATGTTAAGCCCCCAGTTTTATGGGGAGTTAAAAGAGAA
AGAAGTGCTCCGAGCTTTATATTCCTGGCTCCAGGCATGTTCAGAGGTGA
GATACTGTCCACAGTCTCGGAAAGAACGTCTTATCTCTTGGGGGGATCTT
ATCCTTTTTAGCTGAAGTATCTAATAATCCTGATCCAGGATCTGATCCTC
TTAAATAGCAAAACGGCTCTTAATTCTCATCTATCTGACATTTTGGAGTG
TCTATCTTATACGTAGGTTTCCTCTTAACACCTTCCCTTTTTGAGAAGAG
TTAATCCTTCATTGGGTGCTTCCTTGTCTCCTTTAGAATCCCTCTTCTGT
CCTGCCTGCTGAACATTGGGCTTGCTTGAAATCTGCCTCTCATGGTTGCA
TCCCTCTCAAATATAATACGTCCCCATTTCTCTTCGGTTTTC
NCCCCNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCAGTTATTCAAAC
AAAATACTTTGTCATAGTAGTGGATAAATATTCACCATAGCCAAGGAGGC
TTCCTCAATATAAGCCGGTTGATGAAAAGATATGAACATATATTGCCTTC
AGACTGTGACATGTTATTTGGCCATAAGCTTCAATACATTTTTTTTAATT
AAGAAAATTTTATGTGCATGATTGTTTGTGCATTGTGTATGTGCATGGTA
CCCAGTAGCCATGGAGACCAGAAGAGGGTGTTAGATCTTTTATAACTGGA
GTCCTAGGCAATTGTGAGCGAGCTGTCGTGTGGGGGCTTGGAACTGAATC
CAGGTTCTCTGCATGAGCAGTAAGTGCTCTTAACTGCTGAGCCATCTCTC
AGAGCCCAAGGTGCCACGAAATGTTGATCCATGTTGCAATATGCACAAAA
GACCAGACACACCAGAGCAGACCAGTTACTCTTCTTCCAGAAGCCACACA
TGTATGATTCCATTTATATGGAATGTCCCAAGCCAGCAAACCCATAAAGA
CTCAGATTAATGGTTGACAGTTTGCAGGAAGATACCATTGGAGGTGAATG
AGTGCTGATTGGGTGTGGGGTTCCTTGTGGAATGATGAAACTTTCCGAAT
TGGGATCGCTATTCATCTCTGGGGATGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_o10.b1 MSMg01no351_o10.b1 CHROMAT_FILE:
MSMg01no351_o10.b1 PHD_FILE: MSMg01no351_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:15 2005
         (325 letters)



>mm_chr4_83642874_83643598
          Length = 725

 Score =  582 bits (301), Expect = e-171
 Identities = 316/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctgattcgtaaggactttctgtgcatgcatatcctgaagattagctcattca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattctcctgatttgtaaggactttctgtgcatgcatatcctgaagattagctcattca 466

                                                                       
Query: 65  tttcctttggaactgttcatagtgggccttgctgtaggagaagttaggcctaggatgccc 124
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 465 gttcctttggaactgttcatagtgggccttgctgtaggagaagttagggctaggatgccc 406

                                                                       
Query: 125 ctcaaagctctcagctcctccagcagatgctggcccatgaggcctggctgctgctctcct 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 405 ctcaaagctctcagctcctccagcggatgctggcccatgaggcctggctgctgctctcct 346

                                                                       
Query: 185 gtctctgtgagcccctctggcaagcatgctcagggaggccttcacttccctttttttcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtctctgtgagcccctctggcaagcatgctcagggaggccttcacttccctttttttcaa 286

                                                                       
Query: 245 gaccaaaggtcaccatgttaagcccccagttttatggggagttaaaagagaaagaagtgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gaccaaaggtcaccatgttaagcccccagttttatggggagttaaaagagaaagaagtgc 226

                                
Query: 305 tccgagctttatattcctggc 325
           ||||||||||| |||||||||
Sbjct: 225 tccgagctttaaattcctggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no351_o10.g1 MSMg01no351_o10.g1 CHROMAT_FILE:
MSMg01no351_o10.g1 PHD_FILE: MSMg01no351_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:15 2005
         (437 letters)



>mm_chr4_83475199_83476035
          Length = 837

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcagttattcaaacaaaatactttgtcatagtagtggataaatattcaccatagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcagttattcaaacaaaatactttgtcatagtagtggataaatattcaccatagcca 260

                                                                       
Query: 61  aggaggcttcctcaatataagccggttgatgaaaagatatgaacatatattgccttcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 261 aggaggcttcctcaatataagccggttgatgaaaagatatgaacatatattgtattcaga 320

                                                                       
Query: 121 ctgtgacatgttatttggccataagcttcaatacattttttttaattaagaaaattttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgacatgttatttggccataagcttcaatacattttttttaattaagaaaattttat 380

                                                                       
Query: 181 gtgcatgattgtttgtgcattgtgtatgtgcatggtacccagtagccatggagaccagaa 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcatgattgtttgtgcattgtgtatatgcatggtacccagtagccatggagaccagaa 440

                                                                       
Query: 241 gagggtgttagatcttttataactggagtcctaggcaattgtgagcgagctgtcgtgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggtgttagatcttttataactggagtcctaggcaattgtgagcgagctgtcgtgtgg 500

                                                                       
Query: 301 gggcttggaactgaatccaggttctctgcatgagcagtaagtgctcttaactgctgagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcttggaactgaatccaggttctctgcatgagcagtaagtgctcttaactgctgagcc 560

                                                                       
Query: 361 atctctcagagcccaaggtgccacgaaatgttgatccatgttgcaatatgcacaaaagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctctcagagcccaaggtgccacgaaatgttgatccatgttgcaatatgcacaaaagac 620

                            
Query: 421 cagacacaccagagcag 437
           |||||||||||||||||
Sbjct: 621 cagacacaccagagcag 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)