NNNGGTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTGAAGTTCTGTACCCCTATTTTCAATACATTAT
TTGGTTTTCTGGAGTCCAACTTCTTGATATATATATTGGATTTAAGATTG
GTAAAGATCTTTTCCCTATCAGTTGGTTGCTGTTTTGTCTTATTGACATT
GTCCTTTGCCTTACAAAAGCTTTGCAATTTTACGAGGTCCCATTTCTCAA
TTCCTGATCTAAGAGCACAAGTGATTAGTCTTCTGTTAAGGAAAAATCCC
CTTGTGCCCATATGTTTGAGGCTCTTCCCCACTTTCTCCTCTATAACTTT
CAGCATATCAGGTTATAAGTGGAAGTCCTTGATCCACTTGGACTTGAGCT
TTGTACAAGGAGATAAAAATGGGTGGATTTGCACTCTTCTACATGCAGAC
CACAAGTTGAAACAGCACAATTAGTTTTAAAAAAAAATCTGTCTTTTTTC
CACTGGATAATTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAAGTGTG
TGGCTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACATGCCTGT
CATTGTACCAGTACCATGCAGTTTTTAATCACAGTGGCACTGTAGTACAG
CTTGAGGTCAGGGATGGTGATTAGACCAGAAATTCTTTTATTTTTGAAAA
TAAAAATTGCTATCCTAAGGTTTTTTTTTTTAATTCCAGGTGAAGG

NNNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATCTGTACCCT
ATTTTTATTTGTGATATTTGTTTTCATAATAACCACTTTTTAGTTCAATT
TTTCTCATATTTTAGAATTTCACTTTAAGCTTTCTCTAAACATACCCAGT
TTCAGCTGTGTATACATCTGGCAGTGAGTACATGCAGCTAGATAGAGAAT
TAATAATTTCAATTGGCTTCATAATGATTTTTCTCATGTGAAATATTGAC
ATGTCTTTGAACTTATGTAGATCAGAAAAAATATCAAGAAAATACAAACT
GTATCATTTTTAATTCTGCAGAAGACAAAGAGGCAGGGGTTTAGTATTAG
GCTTAAAATTCAAAACTCACCTAGGGTAGAAAAAAAGGTGGGAATTACTT
GAAAATATGTATGTTCACACACTGAGACACACACATACACATACACACAC
ACACACACACACACACACACACACACACACACACACACAGTCTACAAATA
TAAAAGAAATATGAAAAGAATCTTANAGAGTTGTGAGACAACTGAGCTAA
GAGCTATGCACTTCATGAAAATGTGGAAAGTANATGAAACGAAAGCTTTA
AAAGTTAGAAAAATGAATGGATACTGAATAAAATTACCCAATAAGACTGC
GGACATAAACTGTAGTTTAACGAAGCCAGGAAAAAGCCATAAAAACAAGC
CCGGAGGGGGTTAAGGG

Query= MSMg01no351_o22.g1 MSMg01no351_o22.g1 CHROMAT_FILE:
MSMg01no351_o22.g1 PHD_FILE: MSMg01no351_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:18 2005
         (494 letters)



>mm_chr4_38964088_38964981
          Length = 894

 Score =  866 bits (448), Expect = 0.0
 Identities = 474/494 (95%), Gaps = 18/494 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtttagatctgtaccctatttttatttgtgatatttgttttcataataaccactttt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 682 tctgtttagatctgtaccctatttttatttgtgatatttgtttttataataaccactttt 623

                                                                       
Query: 61  tagttcaatttttctcatattttagaatttcactttaagctttctctaaacatacccagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tagttcaatttttctcatattttagaatttcactttaagctttctctaaacatacccagt 563

                                                                       
Query: 121 ttcagctgtgtatacatctggcagtgagtacatgcagctagatagagaattaataatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttcagctgtgtatacatctggcagtgagtacatgcagctagatagagaattaataatttc 503

                                                                       
Query: 181 aattggcttcataatgatttttctcatgtgaaatattgacatgtctttgaacttatgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aattggcttcataatgatttttctcatgtgaaatattgacatgtctttgaacttatgtag 443

                                                                       
Query: 241 atcagaaaaaatatcaagaaaatacaaactgtatcatttttaattctgcagaagacaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atcagaaaaaatatcaagaaaatacaaactgtatcatttttaattctgcagaagacaaag 383

                                                                       
Query: 301 aggcaggggtttagtattaggcttaaaattcaaaactcacctagggtagaaaaaaaggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggcaggggtttagtattaggcttaaaattcaaaactcacctagggtagaaaaaaaggtg 323

                                                                       
Query: 361 ggaattacttgaaaatatgtatgttcacacactgagacacacacatacacatacacacac 420
           ||||||||||||||||||||||||||| ||||||||||||||||||              
Sbjct: 322 ggaattacttgaaaatatgtatgttcatacactgagacacacacat-------------- 277

                                                                       
Query: 421 acacacacacacacacacacacacacacacacacacacagtctacaaatataaaagaaat 480
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ----acacacacacacacacacacacacacacacacacagtctacaaatataaaagaaat 221

                         
Query: 481 atgaaaagaatctt 494
           ||||||||||||||
Sbjct: 220 atgaaaagaatctt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 14
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)