TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGCTCTTTCTCAGATGGCTCTGAAAGTATAATATAGCTAGAAAA
CTGATGGACAGACAGTAGGAAGAAATGGCACTCTTACAGTAAAATGAACC
AAATTTTAACTTGGAAAAAGCTAGTTTATGTAAGAAAAAAACCTATTTTG
GAGAAGAGTAACAGCCTTTTCCTGAGTCTGTGTCATGGTGGTGGTGGCTT
GCACATCTGAGGAGTCCCAGGATTTACTGTCACTTTACATCAACAGTTCT
AAGCGTGGGTAACAAGGCTGCACTATCCTGGGGAAGGTGAGACCTGGCCA
CATGGACACCATTCATTTGAAACTCTCCCAATATCCATTTTTCTTACAGA
ACAGTTATTTTGTGCAGCAATGTCTGTACTAAAATACTCTGCCAGCACAT
GCCTCAAATTCTGACAAGTTTATTACAAATTAGAAAATTAGAAAACCGCA
AGCGTAGGCTTGACATATTTCTGACTTATTTGAGTTAGCATTTGATAATT
TTCAGCTTGCTATGATCCTCCATTGTCCCATCATGTCCAGCAGAAAAACA
GAAGTAGAACTGTGGCTTGGGGGCATAGAGAGCTTTCCAGTAATCTCCAA
GTGTACATTAAAAATGCCTCTCTGGGGAATACCCCCTTTCATTTCTTCCC
AGAAGGGCACGAGACGCAAATCCTTACCCCACTTATGCCTATAACCTCGG
CAAGCCCAAAAAGGTTTCTTTTCCCCCTCTCCAACTTTG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCGGTTTAGTTCTATACCCCATTT
TTTTCTTCTTGTGATTAACTTCTTGTGTTCTTTATATATTTTGGATCTTA
GCCCTCTATTGGATGTGGGGTTAGTGAACATTTTTTTCCCAATTTGTAGG
CTGCTGATTTGTCTTACCAACTATGTCCTTTGCCTTACAGAAGCTTTCCA
ATTTCATGAGGTCCCATTTATCAATTCTTGATCTTAGAGCATGGGCCATT
GGAGTTCTGTTTAGGAAATTTCCCCCTGTGCCAATGAGTTCAAGGCTTTT
TCCCACTTTCTCTTCTATTATATTCAGTGTATTCGGCCTTATGTTGAGCT
TCCCGACCCTCTCTCTCACTGCCCCCCTTTTCCCCTTTCCCCCCTTTCCT
TCTCCCTCCACTCCTTGTCCCCCTTCCCCCTCTATCCCTTATCCGTTACT
CCCTCCTTTTTCCTCACCCCTCACTCCTTTCCTTTTTCCTCCCCCCCTTT
CCCTTTTCTCCTTCTCCCCCTCCTCTTATCCCTCTTCCTCCCCTTCTTTT
CCCCCCCCTTTTCTCCTTATTTTCCCCCCTTATTCCCCCTTCTTTCCCGT
TTTTCCCCCCCCCCCCTACCCCCTTCCGCCTCTTTCCCCCCCTTTATTTC
TATTCCCCCCCTTTCCTTGCCTCGTCTCTCTTTTATCCTCCTTTCATTCT
TGCTCTCCTTTCCCTTTTCTCTCACCCCGCCCGTTCCCCCTCCCTTACTA
TCCGCCCTCATTTTTCCCCCC

Query= MSMg01no352_b21.b1 MSMg01no352_b21.b1 CHROMAT_FILE:
MSMg01no352_b21.b1 PHD_FILE: MSMg01no352_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:32 2005
         (501 letters)



>mm_chr4_8205291_8206191
          Length = 901

 Score =  938 bits (485), Expect = 0.0
 Identities = 494/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggctctttctcagatggctctgaaagtataatatagctagaaaactgatggac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggctctttctcagatggctctgaaagtataatatagctagaaaactgatggac 264

                                                                       
Query: 65  agacagtaggaagaaatggcactcttacagtaaaatgaaccaaattttaacttggaaaaa 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacggtaggaagaaatggcactcttacagtaaaatgaaccaaattttaacttggaaaaa 324

                                                                       
Query: 125 gctagtttatgtaagaaaaaaacctattttggagaagagtaacagccttttcctgagtct 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 gctagtttatgtaagaaaaaaacctattttggagaagagtaccagccttttcctgagtct 384

                                                                       
Query: 185 gtgtcatggtggtggtggcttgcacatctgaggagtcccaggatttactgtcactttaca 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 gtgtcatggtggtggtggcttgcacatctgaggagtcccaggatttactgtcacttcaca 444

                                                                       
Query: 245 tcaacagttctaagcgtgggtaacaaggctgcactatcctggggaaggtgagacctggcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaacagttctaagcgtgggtaacaaggctgcactatcctggggaaggtgagacctggcc 504

                                                                       
Query: 305 acatggacaccattcatttgaaactctcccaatatccatttttcttacagaacagttatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acatggacaccattcatttgaaactctcccaatatccatttttcttacagaacagttatt 564

                                                                       
Query: 365 ttgtgcagcaatgtctgtactaaaatactctgccagcacatgcctcaaattctgacaagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgtgcagcaatgtctgtactaaaatactctgccagcacatgcctcaaattctgacaagt 624

                                                                       
Query: 425 ttattacaaattagaaaattagaaaaccgcaagcgtaggcttgacatatttctgacttat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttattacaaattagaaaattagaaaaccgcaagcgtaggcttgacatatttctgacttat 684

                            
Query: 485 ttgagttagcatttgat 501
           |||||||||||||||||
Sbjct: 685 ttgagttagcatttgat 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)