BAC Information

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BAC

Clone NameMSMg01-352F17
Chromosome4 (Build37)
Map Location 52,934,818 - 52,935,259
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272
Downstream geneOlfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352F17.T7 (MSMg01no352_f17.b1)MSMg01-352F17.TJ (MSMg01no352_f17.g1)
ACCAG463503AG463504
length777790
length of high quality
(start - end)		460 (50 - 509)437 (81 - 517)
definitionCHROMAT_FILE: MSMg01no352_f17.b1 PHD_FILE: MSMg01no352_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:52 2005CHROMAT_FILE: MSMg01no352_f17.g1 PHD_FILE: MSMg01no352_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAAATTTCTCTTCTGGCTTTAATTAAAATATATGCAGTAA
TGCTAACAATTCTCTCGTGTTACCCAGCATGTTATCTGTTCAACTAATAC
ATTCTTTCCAATTTCTACTTCAGAAGAAATTCAAAGTACTTGTAGATGGA
GTTTAATTAATAATTATTGTAATATGGTCCTTGAAGCTATTTAAATTATG
ATTTTTTCCACAATCTGAGAACATGATAAAGTATATACAATTGAAAATTG
CTATTCATAATTCTTCTGATGATATAATTCTGCAGAATGAATGTAGATAT
TAAAAATACTGAATTACAAATGATTGTGAATAATATGGGAATGATTGCCT
GGACTCTCTGGAGCACAGGAAAATCACAAATAATAACACTTTCAGCAATT
GTTTCATCTACTACTCTTTATTGCTCAAACAATCAAAAGAAACATAGAAT
GAGAGTTCTGTAAGCTCCTAAATGAAAACCAGAGAACAACAATATTGAGC
TGTTTGATTTATGAATAATGCTAATGTCATATCTAGAAATGCTATTTCTT
TTTTATAAAGCTTCCTTAAAAAGGGGGCATCTCGAACGTAACCGGGGTTT
TTGAGAATCTTTTTTTAACCTTTCACCCTCCCCATATAATTTTATTGCAC
CTTCCCATGTTTCTTCTCAAACAATAACTATACCCCGATCTACCCTTTAA
AATTTTCATTTCCCCCTACTCTCTTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAGAAAGAAATCAAAG
AATATCTCAGATGGAAAGATCTCCCAAGCTCATGAATTGGAAGGATTAAC
ATAGAAAAATGGCCATCTTGCCGAAAGCAATCTACAGATTCAATACAATC
CCCATCAAAATTCCAACTCAGTTCTTCACCGAGTTAGAAAGGGTAATTTG
CAAATTCATCTGGAATAACAAAAAAACTAGGATAGCAAAAACTCTTCTCA
AGGATAAAAGAACCTCTGATGGAATCACCATGCCTGACCTCAAGCTGTAC
TACAGAGCAATTGTGATTAAAAAACCCAAAAACTACATGATATTGGTACA
GTGACAGGCAGGTTGATCAATGGAATAGAATTTAGGATCCAGAAATGAAC
CCACACATCTATGTGACAAAGGAGCTAAAACATCCAATGGAAAAAAGACA
GCATTTTCAACAAATGGTGCTGATTCAACTGCGGTTTAGCATGTANAAAG
AAAATCTATCCATTCTTATCCCCTTGTACAAGCTCAAGTCCAAGTGGATT
TATGACCCCTTTCATTAAACCCTAAACTTTGGCAGTAAAAGAAAAGAAAC
TGGGGATGGTTCTCTCTCCTTTATAATAATGCGGAAAATTTCCTGGAAAA
AAGAAAAAATATTTGTCTTTAATAAAAACCCTTACCAATGGGACCCGCCC
CCTTTTTCTAACCTTCCTTTACGGAATAATTTTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_f17.b1 MSMg01no352_f17.b1 CHROMAT_FILE:
MSMg01no352_f17.b1 PHD_FILE: MSMg01no352_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:52 2005
         (460 letters)



>mm_chr4_52934599_52935459
          Length = 861

 Score =  816 bits (422), Expect = 0.0
 Identities = 437/442 (98%), Gaps = 1/442 (0%)
 Strand = Plus / Minus

                                                                       
Query: 20  tcttctggctttaattaaaatatatgcagtaatgctaacaattctctcgtgttacccagc 79
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 661 tcttctggctttaattaaaatatatgcagtaatgctaacaattctcttgtgttacccagc 602

                                                                       
Query: 80  atgttatctgttcaactaatacattctttccaatttctacttcagaagaaattcaaagta 139
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 601 atgttatctgttcaactaatacattctttcctatttctacttcagaagaaattcaaagta 542

                                                                       
Query: 140 cttgtagatggagtttaattaataattattgtaatatggtccttgaagctatttaaatta 199
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 541 cttgtagatggagtttaattaataattattataatatggtccttgaagctatttaaatta 482

                                                                       
Query: 200 tgatttttt-ccacaatctgagaacatgataaagtatatacaattgaaaattgctattca 258
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgattttttcccacaatctgagaacatgataaagtatatacaattgaaaattgctattca 422

                                                                       
Query: 259 taattcttctgatgatataattctgcagaatgaatgtagatattaaaaatactgaattac 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taattcttctgatgatataattctgcagaatgaatgtagatattaaaaatactgaattac 362

                                                                       
Query: 319 aaatgattgtgaataatatgggaatgattgcctggactctctggagcacaggaaaatcac 378
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 361 aaatgattgtgaataatatgggaatgattgcctggactctcttgagcacaggaaaatcac 302

                                                                       
Query: 379 aaataataacactttcagcaattgtttcatctactactctttattgctcaaacaatcaaa 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaataataacactttcagcaattgtttcatctactactctttattgctcaaacaatcaaa 242

                                 
Query: 439 agaaacatagaatgagagttct 460
           ||||||||||||||||||||||
Sbjct: 241 agaaacatagaatgagagttct 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space:   382950
Effective search space used:   382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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