Query= MSMg01no352_i20.b1 MSMg01no352_i20.b1 CHROMAT_FILE:
MSMg01no352_i20.b1 PHD_FILE: MSMg01no352_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:08 2005
(513 letters)
>mm_chr4_83896879_83897791
Length = 913
Score = 911 bits (471), Expect = 0.0
Identities = 496/509 (97%), Gaps = 8/509 (1%)
Strand = Plus / Plus
Query: 5 gaattcataggataccgaagaaactgggctcaggagttgcacacaagagaagaaagcaga 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataggagacagaagaaactgggctcaggagttgcacacaagagaagaaagcaga 264
Query: 65 agacctccatccaagtctgacatagagcattgagaataataacaagcaagatccatgccc 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 agacctccatccaagtctgacatagagcattcagaataataacaagcaagatccatgccc 324
Query: 125 tgtgagccgtgtgcattatcttcatacctaacgggaggaccagtattggcttccttccaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtgagccgtgtgcattatcttcatacctaacgggaggaccagtattggcttccttccaa 384
Query: 185 aatggatcagctatgacacccacacaggctaccctctcctttctgtctcgtagaagagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatggatcagctatgacacccacacaggctaccctctcctttctgtctcgtagaagagag 444
Query: 245 tgaaagaggagaccactgttaaacaatactgctaagagaggatgtaaatgtgacaggtgt 304
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 445 tgaaagaggagaccactgttaaacaatactgctaagagagggtgtaaatgcgacaggtg- 503
Query: 305 acttgtggcaagaccctacgttttagagtctccagagggtagctgtcacatgtcctgtgt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 -------gcaagaccctacgttttagagtctccagagggtagctgtcacatgtcctgtgt 556
Query: 365 gcataccatatccttggtttttccaaggactagtgttttctgatgtgaacaatcagaatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcataccatatccttggtttttccaaggactagtgttttctgatgtgaacaatcagaatg 616
Query: 425 caatttaaatcgggttctttaatctcaatttatatagtcagcattatgtgtgtgtaaacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caatttaaatcgggttctttaatctcaatttatatagtcagcattatgtgtgtgtaaacc 676
Query: 485 taatgacctatactcctaatgcactgctc 513
|||||||||||||||||||||||||||||
Sbjct: 677 taatgacctatactcctaatgcactgctc 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_i20.g1 MSMg01no352_i20.g1 CHROMAT_FILE:
MSMg01no352_i20.g1 PHD_FILE: MSMg01no352_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:08 2005
(383 letters)
>mm_chr4_84037088_84037870
Length = 783
Score = 733 bits (379), Expect = 0.0
Identities = 382/383 (99%)
Strand = Plus / Minus
Query: 1 tctttatcagtccctgagcactaagattacaagtacacagtcttcacctctccaggtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tctttatcagtccctgagcactaagattacaagtacacagtcttcacctctccaggtttg 524
Query: 61 aatgaggccttttaccctatgatttaaaagatgttcttccccttctttcaaccggttagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aatgaggccttttaccctatgatttaaaagatgttcttccccttctttcaaccggttagg 464
Query: 121 aagtccaggggtgttagcagagtcgagggtttttctgttttaaaggtgagtctctctaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aagtccaggggtgttagcagagtcgagggtttttctgttttaaaggtgagtctctctaca 404
Query: 181 tagtcaatgctggcctaggacacattcctctaccagtactgatattataggtatgtgcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tagtcaatgctggcctaggacacattcctctaccagtactgatattataggtatgtgcca 344
Query: 241 gcataccttgcttacagggtaatgtagagcctgtttttacagtgtgaatttgggtttctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gcataccttgcttacagggtaatgtagagcctgtttttacagtgtgaatttgggtttctg 284
Query: 301 tgtttgtgtagaagaatagaaggcactatgataacttgagctagcgtttaattagcaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgtttgtgtagaagaatagaaggcactatgataacttgagctagcgtttaattagcaaat 224
Query: 361 taattagtcatgtttttagaaaa 383
||||||||||||||||||||||
Sbjct: 223 gaattagtcatgtttttagaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
