BAC Information

Click to search

BAC

Clone NameMSMg01-352J19
Chromosome4 (Build37)
Map Location 48,705,839 - 48,706,298
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352J19.T7 (MSMg01no352_j19.b1)MSMg01-352J19.TJ (MSMg01no352_j19.g1)
ACCAG463695AG463696
length799779
length of high quality
(start - end)		464 (45 - 508)412 (74 - 485)
definitionCHROMAT_FILE: MSMg01no352_j19.b1 PHD_FILE: MSMg01no352_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:13 2005CHROMAT_FILE: MSMg01no352_j19.g1 PHD_FILE: MSMg01no352_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCCTTGCCACAGACCTTCCCACAAGTGTACAACCATCATTTACC
TAAAGAAGAGAAATCTAACAGGCCCTAGCTACAGTCTGTGTGAGCTCTAA
AATTATTAACTTGTTTCTTGTTTTTCTGGTTTCATAAGTGCAAAAACAGT
TAGGAAGCTAAGAAATGGCCACTCTCTTTACTCAAAAGGTTTGGCAGGAA
GATGACCTGTGCGGACTGTATTTAATCACACAACCCTTGCGAAGCGAGTT
AACACAGTCCTGACTGAGCTAAGCCTGAGCACCTCCTCGCTCATAATTAG
ACTGCACCAGCCATGCCAAGAGTATTCTTGAATGAAAGGTAAATAGCTAC
TGGGCCTTTGATTTCCATCTTGATAAATGAAGTAATTAGTCTAACGGTCC
CAATCTGGGAAAGCGTGCTGAGAAAGTACAAGGAGTTCACATGTATCGCC
TTTGTTCTTCCCTTAAAAACTGACAGGAAGTCTGTCTGCCACGCACTTCA
CTCCTTTAATCCCACGAGAGGCCGTAAGGCTTGCTCTGAATTTTGAGGCC
AGAATGGTCTATTCAGCGAGCTCCATTGACAACCCTGGCCCTCTCCTATT
AACCCCTGACCTCTTAAATAACAATGAAGGCATTAACCCCCCTCCCCTTT
TTCTTTTTTACTTCACCCTCCCCTTTTTTTTTTTTATTCTTTTCCTTTTC
ACCCCCATCCCCTTCTTTTTTCCTCATCTGTACCCCCCTCTACATTCTT

CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCAGCTTCAGCCAGGTGGCTCTTTCT
TTAGAGTCAGGGGCTAAGGTCATAAAATGCTGGTTCCTGGGATTTTCAAA
AGGTACCTGATTGAATTGATATGCAAGTAGCTTATGCAAAATAAAAGACT
GGGCTTGGATCTGCAAGGGAGAGCTATCCAGTGCTGAGAGTGATCTCCAG
CCAAGAGCTACCTCAAGCAGAGGACTATATTTAGCAGAGAGCTATTTGGA
GCACAACACAGTCTTTCATCAGCTTCACCCCTTCCTCAGGACCCCTGTCC
AAGTGGAGGCTGGTCCTTGCCAGTCAATGTATTCCTATCTGGCCTATAAC
TCCTTATGTAGTTGAGAATGAGAACAGACTTAGATTCCTGATCATCCTGC
CTCCATTTTCCAACATGTTTGATTACAGATGTACCATCACACAGTTTATA
TGGTGCTGGCGACTGAACCCATTGGTTCCTGCCGTGTACGAAAGCCCTGC
ACCCCTGTGCTGATATCTCTAGGATTTTGTCACCCGACCTATACCCTTAT
ATCCCCCGTTAAAAACAATTTTCCTTTTGATAGGCCCCGAACCATATATG
CCCTTTTCCTCCCCTTTTATCTCACCCCCCTTTACCTCACTTTTCTCCTA
TTCCCATTACTTTTTTTTTTCCCTTCCTTTTCTTATCCCCCCCTAACGCC
TCCTCTTTCCCCATTTCTTATTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_j19.b1 MSMg01no352_j19.b1 CHROMAT_FILE:
MSMg01no352_j19.b1 PHD_FILE: MSMg01no352_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:13 2005
         (464 letters)



>mm_chr4_48705635_48706498
          Length = 864

 Score =  859 bits (444), Expect = 0.0
 Identities = 456/460 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctccttgccacagaccttcccacaagtgtacaaccatcatttacctaaagaag 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gaattctctccctggcacagaccttcccacaagtgtacaaccatcatttacctaaagaag 605

                                                                       
Query: 65  agaaatctaacaggccctagctacagtctgtgtgagctctaaaattattaacttgtttct 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agaaatctaacaggccctagatacagtctgtgtgagctctaaaattattaacttgtttct 545

                                                                       
Query: 125 tgtttttctggtttcataagtgcaaaaacagttaggaagctaagaaatggccactctctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgtttttctggtttcataagtgcaaaaacagttaggaagctaagaaatggccactctctt 485

                                                                       
Query: 185 tactcaaaaggtttggcaggaagatgacctgtgcggactgtatttaatcacacaaccctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tactcaaaaggtttggcaggaagatgacctgtgcggactgtatttaatcacacaaccctt 425

                                                                       
Query: 245 gcgaagcgagttaacacagtcctgactgagctaagcctgagcacctcctcgctcataatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gcgaagcgagttaacacagtcctgactgagctaagcctgagcacctcctcgctcataatt 365

                                                                       
Query: 305 agactgcaccagccatgccaagagtattcttgaatgaaaggtaaatagctactgggcctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agactgcaccagccatgccaagagtattcttgaatgaaaggtaaatagctactgggcctt 305

                                                                       
Query: 365 tgatttccatcttgataaatgaagtaattagtctaacggtcccaatctgggaaagcgtgc 424
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 304 tgatttccatcttgataaatgaagtaattagtctaacggccccaatctgggaaagcgtgc 245

                                                   
Query: 425 tgagaaagtacaaggagttcacatgtatcgcctttgttct 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgagaaagtacaaggagttcacatgtatcgcctttgttct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |