BAC Information

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BAC

Clone NameMSMg01-353D01
Chromosome4 (Build37)
Map Location 33,207,382 - 33,207,839
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2
Downstream geneGabrr1, Acy1l2, Srrp, Pnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1, Spaca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353D01.T7 (MSMg01no353_d01.b1)MSMg01-353D01.TJ (MSMg01no353_d01.g1)
ACCAG464128AG464129
length760834
length of high quality
(start - end)		478 (41 - 518)69 (128 - 196)
definitionCHROMAT_FILE: MSMg01no353_d01.b1 PHD_FILE: MSMg01no353_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:59 2005CHROMAT_FILE: MSMg01no353_d01.g1 PHD_FILE: MSMg01no353_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCCATACGCTTTCAGCTTAAACTCCCATCAGTGCATCACA
ACTGGATAGCCTGGCGCACAACTACACACATGCACACATATAGTAACTCA
GCCATAAGTAAGAATGAAACCACGTGGTTTTCAGGAAAGGGGGTGGAACT
AGAGATCAAGTTGAGCGAAATGAGACAAACTCAGAAGGACAATTGCCACG
TGATAAGGAATCTAGATTTTAAAAAGAAAACATGAGAGTGTGAGAGGGAT
TTTAGGAAGAGCAAGAGAGCCAGGAGATGGGGGCAAGGGTGATGGAGCAG
GAATATGATCAAAACGTGTTATGAATGTGTAGGAAAGTCACAATGAAACC
CCTTATTTTAGGTGGATCCTCTGCTGGGCATGGCTGCTTGGGGAGGCAGA
ATGTGGAAAGTTTGACCAAGCTTACCCGACCCTGGGCTGTATGGAAGCGC
GGAGACGCCCTCCGGGAGCGGTAAAGCACAGTCTGAGATGCTGGATAGTC
TGAGTTGGTTCAGGGGTCTCCAGGCCTGCGTATGAGGCAGGGTTATGTTA
TTTCTCACACCCTTGGACTTCCCGATGCTTCCCGGTATTGGCCGACCATG
ATTGGACTCTCCGGCTTTTATGTACTGTGGAACTGTCGATCTTATTCTCG
GGCCTCCGCTCCCCCTGGTCTCCCCTGCATTATACAACATCCGTAATTGT
TGTCATCCCA

CTTTCCACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTAGGGGGAGAACGT
GTGTGGCCGAGCAAGCGGTGGCTGCGTCCGGCGAGCGCGCGCCCGGTGGT
GCTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTTTC
CCTTTTTCCCTTTTTCTTTTCTTTCTTCCTCCCTCCCTTCTTCTCTTCCT
TTCTCCTTCTTTTCCTTCTTTTTCTTTTTCTCCCTTTTTTTTCCTTTTTT
TTTCCCTTTTCTTTTCTCTTTTTCTTCTTTTCTTTCTTTTTCCCTTTTTC
CTCTTTTCCTCTTTTCCTTTTCTTTCTTTTTTTTTCTTTTCTTTTCTTCT
TTTTTCTTCTTTTCTTTTCTTTTCCCTTTTCTTCTTTCCTTCTCCTTTCC
TCCTTTTTTCTTCCTTTTCCTTTCCCCTTTTTTTCTTTTTTTTCTTCCCT
TCCTTCCCCCTTTCTCTTTTTCCCTCTTTTTCTTTCCCTCCCTCCCCTTT
CCTTTTCTCTTTTTTCCCTTTTCTTCCTCTTTTTTTTTTCTTTTTTCTTT
TTTCTCCTTTCCCCTCCCTTTTCTTTCCCCTTTCTTTTTCTTCCCCTTTT
TTCCCCCTTTTTTTTTTTCCTCTTTTTTCTTCCCTCCTTTCTTTTCCCCT
TTTTACCTTTCTTTTTCCCTCTTTTCCCCTTTTTTTTTCTCCTTTTTTCC
TTCTTTCATCCCCTTTTTTCCCCTTTTTTCCTTTTTTTTTTTTTTCTCCC
TTCTTCTTTCCTTTTTTTTTTTTTCTCCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_d01.b1 MSMg01no353_d01.b1 CHROMAT_FILE:
MSMg01no353_d01.b1 PHD_FILE: MSMg01no353_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:59 2005
         (478 letters)



>mm_chr4_33207066_33207943
          Length = 878

 Score =  832 bits (430), Expect = 0.0
 Identities = 451/458 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattccatacgctttcagcttaaactcccatcagtgcatcacaactggatagcctggc 75
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ggaattccatacgcagtcagcttaaactcccatcagtgcatcacaactggatagcctggc 715

                                                                       
Query: 76  gcacaactacacacatgcacacatatagtaactcagccataagtaagaatgaaaccacgt 135
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 acacaactacacacatgcacacatatagtaactcagccataagtaagaatgaaaccacgt 655

                                                                       
Query: 136 ggttttcaggaaagggggtggaactagagatcaagttgagcgaaatgagacaaactcaga 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ggttttcaggaaagggggtggaactagagatcaagttgagcgaaatgagacaaactcaga 595

                                                                       
Query: 196 aggacaattgccacgtgataaggaatctagattttaaaaagaaaacatgagagtgtgaga 255
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 594 aggacaattgccacgtgataaggaatctagattttaaaaagaaaacatgaaagtgtgaga 535

                                                                       
Query: 256 gggattttaggaagagcaagagagccaggagatgggggcaagggtgatggagcaggaata 315
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gagattttaggaagagcaagagagccaggagatgggggcaagggtgatggagcaggaata 475

                                                                       
Query: 316 tgatcaaaacgtgttatgaatgtgtaggaaagtcacaatgaaaccccttattttaggtgg 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgatcaaaacgtgttatgaatgtgtaggaaagtcacaatgaaaccccttattttaggtgg 415

                                                                       
Query: 376 atcctctgctgggcatggctgcttggggaggcagaatgtggaaagtttgaccaagcttac 435
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atcctccgctgggcatggctgcttggggaggcagaatgtggaaagtttgaccaagcttac 355

                                                 
Query: 436 ccgaccctgggctgtatggaagcgcggagacgccctcc 473
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 354 ccgaccctgggctgtagggaagcgcggagacgccctcc 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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