Query= MSMg01no353_e10.b1 MSMg01no353_e10.b1 CHROMAT_FILE:
MSMg01no353_e10.b1 PHD_FILE: MSMg01no353_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:06 2005
(507 letters)
>mm_chr4_46839864_46840770
Length = 907
Score = 859 bits (444), Expect = 0.0
Identities = 489/504 (97%), Gaps = 2/504 (0%)
Strand = Plus / Plus
Query: 5 gaattcttctttttcaaaaaaaaaaggtacctccacggcttaccccaggtgggttgtaaa 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctttaaaaaaaaaaaaaggtacctccacggcttaccccaggtgggttgtaaa 264
Query: 65 tttaaaagtaagatcattcgtgccaggtgtgaggggcagtggtcactatcagggatatga 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaaagtaagatcattcgcgccaggtgtgaggggcagtggtcactatcagggatatga 324
Query: 125 tcaaagagaggataagacagcat-gcttccggttcagttactgcagggcaagccacagta 183
|||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 325 tcaaagagaggataagacag-ataacttcgggttcagttactgcagggcaagccacagta 383
Query: 184 atgccattgacctaaacccaagaggtgtggtctctctgcaggaacaagctagcctgcacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 atgccattgacctaaacccaagaggtgtggtctctctgcaggaacaagctaacctgcacc 443
Query: 244 ccatgaaaccccaaagggatgcatagaagcctctgttgggagagatcttttcactactcc 303
| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 444 ctgtgaaaccccaaagggatgcgcagaagcctctggtgggagagatcttttcactactcc 503
Query: 304 cgggaaggagcagctgtggcagcttggtaactccccagagagggccagaggcagctgttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgggaaggagcagctgtggcagcttggtaactccccagagagggccagaggcagctgttc 563
Query: 364 acaggctgggcacagcaaattgtgtgatatgctgggttctggggcaggctgccaagccaa 423
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 acaggctgggcacagcaaattgtgtgatatgctgggttctggggcaggccgccaagccaa 623
Query: 424 cctggggcgcctctgcaccccacccctccaccgcctgctgccttactgctgattcacaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctggggcgcctctgcaccccacccctccaccgcctgctgccttactgctgattcacaag 683
Query: 484 caaggccaggatatgccagaagga 507
||||||||||||||||||||||||
Sbjct: 684 caaggccaggatatgccagaagga 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_e10.g1 MSMg01no353_e10.g1 CHROMAT_FILE:
MSMg01no353_e10.g1 PHD_FILE: MSMg01no353_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:06 2005
(379 letters)
>mm_chr4_46969531_46970308
Length = 778
Score = 685 bits (354), Expect = 0.0
Identities = 373/380 (98%), Gaps = 3/380 (0%)
Strand = Plus / Minus
Query: 1 aaagttggaggtgcatgaacgtccttaaggcgtttccttacagcccagtagataagtgaa 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aaagttggaggtgcatgaatgtccttaaggcgtttccttacagcccagtagataagtgaa 519
Query: 61 agacaggctgtaaaacccaaggtcagcagcagaggaaaggaaccacaggacttcaggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agacaggctgtaaaacccaaggtcagcagcagaggaaaggaaccacaggacttcaggagg 459
Query: 121 gggtgccccacaggtagacaggagctgtgtgggtgcaagaggggcctagaatgtagtaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gggtgccccacaggtagacaggagctgtgtgggtgcaagaggggcctagaatgtagtaag 399
Query: 181 gtgtcgcctacctacctggtttgtaaaaataaacaatggtttctgtcattggtggggtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtgtcgcctacctacctggtttgtaaaaataaacaatggtttctgtcattggtggggtta 339
Query: 241 agaattactt-ctccctgcagtggggtgttgtgtaagtctgtgcaactaactctctaaac 299
|||| || || | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 338 agaagtattttcaccctgcagtggggtgttgtgtaa--ctgtgcaactaactctctaaac 281
Query: 300 ggtgacctggggacgtccctgactgactttaagctatgtctctttgggtctagaaaatcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggtgacctggggacgtccctgactgactttaagctatgtctctttgggtctagaaaatcc 221
Query: 360 ctttttaggtaatttcctca 379
||||||||||||||||||||
Sbjct: 220 ctttttaggtaatttcctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 778
Length adjustment: 9
Effective length of query: 370
Effective length of database: 769
Effective search space: 284530
Effective search space used: 284530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
