Query= MSMg01no353_g06.b1 MSMg01no353_g06.b1 CHROMAT_FILE:
MSMg01no353_g06.b1 PHD_FILE: MSMg01no353_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:15 2005
(484 letters)
>mm_chr4_9675006_9675888
Length = 883
Score = 876 bits (453), Expect = 0.0
Identities = 468/473 (98%), Gaps = 1/473 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaccgctttctggggttttcacaggtgatttcaaaagtaaaaaagagatataat 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaccgcacactggggttttcacaggtgatttcaaaagtaaaaaagagatataat 264
Query: 65 ttgttttaaataacaaatatgttttctttgtttgattggtaagtttctgggaagcctaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgttttaaataacaaatatgttttctttgtttgattggtaagtttctgggaagcctaac 324
Query: 125 ttaaataagatgcacttcttctaaaggatgaaagcagagggttttgtcaaactgtgagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaaataagatgcacttcttctaaaggatgaaagcagagggttttgtcaaactgtgagtc 384
Query: 185 acgaggtgggggttgttaatgttggctactctcacttatcttccgccaccaaggcccagc 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 acgaggtgggggttgttaatgttggctactctcacttatcttctgccaccaaggcccagc 444
Query: 245 ccaggaaaccactgataagctttgccagattagattttctctgttgagatacaaacttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaggaaaccactgataagctttgccagattagattttctctgttgagatacaaacttca 504
Query: 305 tcttatgtttcattttatatttgacccacaactgtgacaaaatggcaggtgagatgtaca 364
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttatgtttcattt-atatttgacccacaactgtgacaaaatggcaggtgagatgtaca 563
Query: 365 aaagttagtgatgggagtaatttccttctcttgctttaggaattaaaggcctactaaatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaagttagtgatgggagtaatttccttctcttgctttaggaattaaaggcctactaaatt 623
Query: 425 gtttttctaatcgatgggttgctttattttctgttttgttttgttttgttttg 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtttttctaatcgatgggttgctttattttctgttttgttttgttttgttttg 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space: 413802
Effective search space used: 413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_g06.g1 MSMg01no353_g06.g1 CHROMAT_FILE:
MSMg01no353_g06.g1 PHD_FILE: MSMg01no353_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:15 2005
(461 letters)
>mm_chr4_9800129_9800988
Length = 860
Score = 839 bits (434), Expect = 0.0
Identities = 452/458 (98%), Gaps = 1/458 (0%)
Strand = Plus / Minus
Query: 4 catgattgttctcccctgtgaggctgtagtgtacatggcacatacataagttaaatggaa 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 660 catgattgttctcccctgtgaggctgtagtgtagatggcacatacataagttaaatggaa 601
Query: 64 tttggggaagcaaggaacagagtatttttaaaaattaaaactttcttataaatctttaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tttggggaagcaaggaacagagtatttttaaaaattaaaactttcttataaatctttaag 541
Query: 124 aaaatgcatctgtgtcaacacaataaaaataatatcccagcctactggttttcatctgct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aaaatgcatctgtgtcaacacaataaaaataatatcccagcctactggttttcatctgct 481
Query: 184 agccccggggaagccccagggccttaaccctttcactgacaatgctctttggaaacacat 243
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ag-cccggggaaggcccagggccttaaccctttcactgacaatgctctttggaaacacat 422
Query: 244 gagcaatggaccctcagctctgcacaggtgacagggactgtctcctcttctttggtcatg 303
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 421 gagcaatggaccctcagctctgcacaggtgacagggactgtctcctcttcttaggtcata 362
Query: 304 attccccagtaattcaagaaagtggtatcttagagatgcattgcacaacagtaatcacta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attccccagtaattcaagaaagtggtatcttagagatgcattgcacaacagtaatcacta 302
Query: 364 tccaagacaattcatcttcataactgagaagagtatatatttgtctgatttgatttacgg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccaagacaattcatcttcataactgagaagagtatatatttgtctgatttgatttacgg 242
Query: 424 acaataaaaacccctcccatgtttctggcagttctctc 461
| ||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaataaaaacccctcccatgtttctggcagttctctc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 860
Length adjustment: 10
Effective length of query: 451
Effective length of database: 850
Effective search space: 383350
Effective search space used: 383350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
