BAC Information

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BAC

Clone NameMSMg01-353H07
Chromosome4 (Build37)
Map Location 11,204,055 - 11,321,709
singlet/doubletdoublet
Overlap geneDpy19l4, Rbm35a
Upstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8
Downstream geneLOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353H07.T7 (MSMg01no353_h07.b1)MSMg01-353H07.TJ (MSMg01no353_h07.g1)
ACCAG464329AG464330
length758765
length of high quality
(start - end)		496 (51 - 546)490 (80 - 569)
definitionCHROMAT_FILE: MSMg01no353_h07.b1 PHD_FILE: MSMg01no353_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:20 2005CHROMAT_FILE: MSMg01no353_h07.g1 PHD_FILE: MSMg01no353_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,321,217 - 11,321,709)(11,204,055 - 11,204,544)
sequence
CTTTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAAAGCCATTTCCTATCTGCCTGGAGGAGTGTGCCTGTCA
CAGCTGGAGCCCCGAACCCCGCCCCCTCCCCCCTTCCCCCCCAGCTGAGA
GCACTTGCCCTGTTTATGCATTTGTTTTTGTGATGAGCAATTTGTTCACC
CCTCTCATAGAGCAAGCACCGATTTTGTTTGGTACAAACAAGCCTGAGCA
CGGTAGTAGATGAACAACTGAATACATTTACCAAGCCTGACGGTCACTCA
GAAGGCCACAGGTGAAAAAGTGCTGCCAACAGTACACTGTAAGAATTGGA
CATAGACGCATCATAAAAGTTAACTTCCTTGTCTCTAAACAGCAGTTTCT
GCCAAATGTCCTCTCTCAATGTAACACTATATACTTCAAACATACAGAAG
GCCAGGGGAAAACTGTTTCCTGGTCCCTGGGTTATATTTTGCCAGACTAG
CAACGTTAACCCTTTGTCAGTCAAAGGGGTAGCTGAGCTGATAACAAATA
AGCCTGAGGCCTAGGGATTCAGAGTCGATATTCCCCCCCCCCAAAATANA
AAAAAACTAACTCAAACACCCCTCAGTTTATTATCGTAGTTTCCTTACCA
CCCCCACCCCTTTTGGGCCCACTCCTTTAATCCCTCCCCCTTCTACCTTT
CAGGCCTTGATATTCTTCGCGAAATCTTAAATTAATTGAATAGGTTTTTT
TTATAAAA

NTTTACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTAGTTCTGTTAATTCTGT
AATTAATCGTGGAAAAAACTAAAACACAAAACAAAACACCCAGAGGTGTA
AGTAACTGGAAAGCTGAAAACTGTTTCAAAGTATTCCAAAAGACCACCTT
GAAGCATGCTGACATGTCAACATTGCCACATTGCTGTTCTCTTCACTGAC
CTGGTCATCTTTTCAACCGGAATAATTATAATTTTATAGTTACTCACTGC
TTAGATGGAGTAACTAATGTTATTATCAAACAACAATATAACACTATAAC
ATCGGTTTTAGTGTTCATGTATAGACATAGTACATTTAAAAATTCCAGGA
CAAATATTTTGCAGGTTGATTGGCAATTAGTTTCCTGCTATATTATGTTA
AGCCAAAAAATTATTTCATTTCACAGATATTAAAATTGGAGTTACCAAAA
TATATTTAAATATTAAGACCTACTTATTCAAGTTTTGTCAATTATGGTAA
GAACTTACAATAGCATTAGACTGAAGACAACTGCATTAGATTACATCCCT
AAACTGTTTTAGGCTGGATGTGATACAAACTTGTATAATTCCAGCACTTG
AGATGTTGAGTTAATAGGAATACTAAAACTTCCAGGCCCCGCTGCGTCTA
ACTATATGAAACTTTGTTTCTAACAATATACAGGGATACGTATTCCTCTT
TTTTCTCAATAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_h07.b1 MSMg01no353_h07.b1 CHROMAT_FILE:
MSMg01no353_h07.b1 PHD_FILE: MSMg01no353_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:20 2005
         (496 letters)



>mm_chr4_11321014_11321909
          Length = 896

 Score =  938 bits (485), Expect = 0.0
 Identities = 491/493 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaaagccatttcctatctgcctggaggagtgtgcctgtcacagctggagcccc 63
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 696 ggaattcaaaagccatttcctatctgcccggaggagtgtgcctgtcacagctggagcccc 637

                                                                       
Query: 64  gaaccccgccccctccccccttcccccccagctgagagcacttgccctgtttatgcattt 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gaaccccgcccccttcccccttcccccccagctgagagcacttgccctgtttatgcattt 577

                                                                       
Query: 124 gtttttgtgatgagcaatttgttcacccctctcatagagcaagcaccgattttgtttggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gtttttgtgatgagcaatttgttcacccctctcatagagcaagcaccgattttgtttggt 517

                                                                       
Query: 184 acaaacaagcctgagcacggtagtagatgaacaactgaatacatttaccaagcctgacgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acaaacaagcctgagcacggtagtagatgaacaactgaatacatttaccaagcctgacgg 457

                                                                       
Query: 244 tcactcagaaggccacaggtgaaaaagtgctgccaacagtacactgtaagaattggacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcactcagaaggccacaggtgaaaaagtgctgccaacagtacactgtaagaattggacat 397

                                                                       
Query: 304 agacgcatcataaaagttaacttccttgtctctaaacagcagtttctgccaaatgtcctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agacgcatcataaaagttaacttccttgtctctaaacagcagtttctgccaaatgtcctc 337

                                                                       
Query: 364 tctcaatgtaacactatatacttcaaacatacagaaggccaggggaaaactgtttcctgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tctcaatgtaacactatatacttcaaacatacagaaggccaggggaaaactgtttcctgg 277

                                                                       
Query: 424 tccctgggttatattttgccagactagcaacgttaaccctttgtcagtcaaaggggtagc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tccctgggttatattttgccagactagcaacgttaaccctttgtcagtcaaaggggtagc 217

                        
Query: 484 tgagctgataaca 496
           |||||||||||||
Sbjct: 216 tgagctgataaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_h07.g1 MSMg01no353_h07.g1 CHROMAT_FILE:
MSMg01no353_h07.g1 PHD_FILE: MSMg01no353_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:20 2005
         (490 letters)



>mm_chr4_11203855_11204744
          Length = 890

 Score =  940 bits (486), Expect = 0.0
 Identities = 489/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtagttctgttaattctgtaattaatcgtggaaaaaactaaaacacaaaacaaaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtagttctgttaattctgtaattaatcgtggaaaaaactaaaacacaaaacaaaacac 260

                                                                       
Query: 61  ccagaggtgtaagtaactggaaagctgaaaactgtttcaaagtattccaaaagaccacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagaggtgtaagtaactggaaagctgaaaactgtttcaaagtattccaaaagaccacct 320

                                                                       
Query: 121 tgaagcatgctgacatgtcaacattgccacattgctgttctcttcactgacctggtcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagcatgctgacatgtcaacattgccacattgctgttctcttcactgacctggtcatc 380

                                                                       
Query: 181 ttttcaaccggaataattataattttatagttactcactgcttagatggagtaactaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcaaccggaataattataattttatagttactcactgcttagatggagtaactaatg 440

                                                                       
Query: 241 ttattatcaaacaacaatataacactataacatcggttttagtgttcatgtatagacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattatcaaacaacaatataacactataacatcggttttagtgttcatgtatagacata 500

                                                                       
Query: 301 gtacatttaaaaattccaggacaaatattttgcaggttgattggcaattagtttcctgct 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaaatttaaaaattccaggacaaatattttgcaggttgattggcaattagtttcctgct 560

                                                                       
Query: 361 atattatgttaagccaaaaaattatttcatttcacagatattaaaattggagttaccaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atattatgttaagccaaaaaattatttcatttcacagatattaaaattggagttaccaaa 620

                                                                       
Query: 421 atatatttaaatattaagacctacttattcaagttttgtcaattatggtaagaacttaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatatttaaatattaagacctacttattcaagttttgtcaattatggtaagaacttaca 680

                     
Query: 481 atagcattag 490
           ||||||||||
Sbjct: 681 atagcattag 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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