Query= MSMg01no353_k04.b1 MSMg01no353_k04.b1 CHROMAT_FILE:
MSMg01no353_k04.b1 PHD_FILE: MSMg01no353_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:34 2005
(395 letters)
>mm_chr4_9771541_9772335
Length = 795
Score = 681 bits (352), Expect = 0.0
Identities = 382/392 (97%)
Strand = Plus / Minus
Query: 4 ggaattcacaaaagctgcctcctgccagagcctgggcagagctctggctgaggagctcca 63
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 595 ggaattcacaaaagcagcctcttgccagagcctgggtagagctctggctgaggagctcca 536
Query: 64 actggagaggagtcgggcgctttctttgccacttacccagtcctctgtctacaaagctag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 actggagaggagtcgggcgctttctttgccacttacccagtcctctgtctacaaagctag 476
Query: 124 tgatcgtattagctgacttggaagactggaaaaagctggcattgatgcccagcttctcgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgatcgtattagctgacttggaagactggaaaaagctggcattgatgcccagcttctcgg 416
Query: 184 caatggagtaagtcttgtagattgacagcatgtactcgtgaggcaccacgcgcagccccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 caatggagtaagtcttgtagattgacagcatgtactcgtgaggcaccacgcgcagccccc 356
Query: 244 tgcccggcggctcctgcccctgatgttgtccagttggtcgccgccggaggtccttctgcc 303
||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 355 tgcccggcggctcctgcccctgatgttgtccgggcggccgccgccggaggtccttctgcc 296
Query: 304 gcagcccgtgttccgggggcatccggtcctcggcactctcttgtggagttcgctgcatct 363
|||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 295 gcagcccgtgctccgggggcgtccggccctcggcactctcttgtggagttcgctgcatct 236
Query: 364 tcccttctttgcggttccccacgtctttggtg 395
||||||||||||||||||||||||||||||||
Sbjct: 235 tcccttctttgcggttccccacgtctttggtg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_k04.g1 MSMg01no353_k04.g1 CHROMAT_FILE:
MSMg01no353_k04.g1 PHD_FILE: MSMg01no353_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:34 2005
(308 letters)
>mm_chr4_9641072_9641779
Length = 708
Score = 518 bits (268), Expect = e-151
Identities = 298/308 (96%)
Strand = Plus / Plus
Query: 1 ctattggtattaggagcttcgataaagcaatgagtggggagaaggaaggctgaaggagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattggtattaggagcttcgataaagcaatgagtggggagaaggaaggctgaaggagaa 260
Query: 61 ggtcaatgtgatctgctggagatgggaacagaggggaagggaacactgcagcagatggtg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcaatgtgatctgctggagatggaaacagaggggaagggaacactgcagcagatggtg 320
Query: 121 ggctaccaagctgcggatgagaagataataacatttaggaaagaaggagtgatggtctac 180
| |||| |||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 321 gactacaaagctgcggatgagaagataataaaatttaggagagaaggagtgatgatctac 380
Query: 181 agttagcctgcctgcttccatggccagaaagcagcagagggtcctaagtgaagaattctc 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 agttagcctgcctgcttccatggccagaaagcaacagagggtcctaagtgaagaattctc 440
Query: 241 atgcctttgatattttccacattcctgtgtcttctctagtcagtgggcttttcttttctc 300
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcctttgagaagttccacattcctgtgtcttctctagtcagtgggcttttcttttctc 500
Query: 301 tgtggcaa 308
||||||||
Sbjct: 501 tgtggcaa 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space: 209001
Effective search space used: 209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
