BAC Information

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BAC

Clone NameMSMg01-354B19
Chromosome4 (Build37)
Map Location 50,271,433 - 50,414,768
singlet/doubletdoublet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354B19.T7 (MSMg01no354_b19.b1)MSMg01-354B19.TJ (MSMg01no354_b19.g1)
ACCAG464821AG464822
length760776
length of high quality
(start - end)		642 (46 - 687)488 (74 - 561)
definitionCHROMAT_FILE: MSMg01no354_b19.b1 PHD_FILE: MSMg01no354_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:10 2005CHROMAT_FILE: MSMg01no354_b19.g1 PHD_FILE: MSMg01no354_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,271,433 - 50,272,071)(50,414,356 - 50,414,768)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCACTGCTGACCTAAGGGAAGGCAGAAGTACAAATCTGGTTTAC
ATAGACTTAAAAAGCATGGAGGAAAAGGGGCTGAGAACGAATTTATCAAC
ATGTACTTCGGGCTTCTGAACTCACATTCTTACCCAGGCTTGTCTCAAAA
TCCCCAGTTTGTTGTCTTATCAACTTCCAAAGCTAGGAATTCAGGAGTGG
GCCAGAAGATCCAGGTCTGTGTAAGAAAGTCTGACTTGCTATTGCTCAGT
AGTGTAGGTGACTAGAAATAATGGTGATCAATATCCTAAATGCAAGAAGC
AAATATTGAATGTTTTTTCATACAAAATCATAATTTAACAAATATATGTA
TTTATCTAATTTAAGCTTTGTTCAATATAGACATGTCCATAGACATAATA
GAATGGTTTCTCCAGTTTTGTGCATTTGTTATATTTAATTTAAATAAACT
TACAAGATGGTAGGCCATGTCCCAAATGACGTTTGCTTCTTAAAATTCAT
GCATTTGGGTGGAATTCACTTCTGGTTTTGATGAATATTAATGGCTTATA
TAATTTATGTAAAAAATATGATTTGTATGCAACCTCTAACACCATGTCAT
AAAATATATTATACTTTGCTCTCTGCTCTTTTTACTCCTAAGNCTGGGGT
AAGTCAACTGCCATGTCNTAAAGACTGCCATCACAGTCTATTTTGGCTTC
AGTAGCAAAN

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGAGTGGTTGTACAAGCTTGCAATCC
ACCACCAATAGAGGAGTGTTCCTCTTTCTCCACATTCTTGCCAGTAACTG
CTTTCACCTGAATTTGCCCTGCATTGTTTATCATTATGTTTATATGTACT
TTATGTAAGGAAGAGTCAGAGAGATAGGGAGAAAGAAAGAAAGAGAGAGG
AGAAAGAGAAAGACTGTGTGTTAATTAAAAGAAGTTATAGTATTTACTCA
TATATAAAACTTTATTATTTTTAACATCTTTATAAAAGTATATATTATGC
ATTAGAAAACCTTGTATATAGTAAATACTTTCTGGAATCTTACAGTTGAT
TACTGCTTACTGATCCACTTGGCAGTGGGATGTGGGAGAGTGAAGCCTAA
AAATGAGGTGTACTAAAGTCAACTTTATTAAGAGCATCAGAAAATTTATT
TTAATAGAGTTAAGGGTCACATGAGTTAAGTGTCTACTCATAATGGTAAG
CCTCCCATGGTGGATAAACAGCATGTAGCATGCAAGTACTCACATGGCAA
AAACATACAAATAAGTAACAATAGCCCACAATAGTGAACAATCTAAACAA
ACTCACTCCTTTCTGGCAGAAGGACAAAAAAATAATTCCCCAGACAAGTC
TCTGTTTTTGAAAAAATGGAGGTCCCAAGATTAAAAACTTGTTTTTTTGG
ATTTCCTTAAAGGAACCTGAATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_b19.b1 MSMg01no354_b19.b1 CHROMAT_FILE:
MSMg01no354_b19.b1 PHD_FILE: MSMg01no354_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:10 2005
         (642 letters)



>mm_chr4_50271230_50272271
          Length = 1042

 Score = 1189 bits (615), Expect = 0.0
 Identities = 633/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccactgctgacctaagggaaggcagaagtacaaatctggtttacatagactt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccactgctgacctaagggaaggcagaagtacaaatctggtttacatagactt 263

                                                                       
Query: 64  aaaaagcatggaggaaaaggggctgagaacgaatttatcaacatgtacttcgggcttctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 aaaaagcatggaggaaaaggggctgagaacgaatttatcaacatgtacttcaggcttctg 323

                                                                       
Query: 124 aactcacattcttacccaggcttgtctcaaaatccccagtttgttgtcttatcaacttcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aactcacattcttacccaggcttgtctcaaaatccccagtttgttgtcttatcaacttcc 383

                                                                       
Query: 184 aaagctaggaattcaggagtgggccagaagatccaggtctgtgtaagaaagtctgacttg 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagctaggaattcaggagtgggtcagaagatccaggtctgtgtaagaaagtctgacttg 443

                                                                       
Query: 244 ctattgctcagtagtgtaggtgactagaaataatggtgatcaatatcctaaatgcaagaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctattgctcagtagtgtaggtgactagaaataatggtgatcaatatcctaaatgcaagaa 503

                                                                       
Query: 304 gcaaatattgaatgttttttcatacaaaatcataatttaacaaatatatgtatttatcta 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 gcaaatattgaatgttttttcatacaaaatcataatttaacaaatatatgtatttaccta 563

                                                                       
Query: 364 atttaagctttgttcaatatagacatgtccatagacataatagaatggtttctccagttt 423
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 atttaagctttgttcaatatagacatgtccatagacataatagtatggtttctccagttt 623

                                                                       
Query: 424 tgtgcatttgttatatttaatttaaataaacttacaagatggtaggccatgtcccaaatg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtgcatttgttatatttaatttaaataaacttacaagatggtaggccatgtcccaaatg 683

                                                                       
Query: 484 acgtttgcttcttaaaattcatgcatttgggtggaattcacttctggttttgatgaatat 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 acgtttgcttcttaaaattcatgcatttgggtggaattcacttctggttttgataaatat 743

                                                                       
Query: 544 taatggcttatataatttatgtaaaaaatatgatttgtatgcaacctctaacaccatgtc 603
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaatggcttatataatttatgtaaaaaatatgatttgtatgcaacctctaacaccatgtc 803

                                                  
Query: 604 ataaaatatattatactttgctctctgctctttttactc 642
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ataaaatatattatactttgctctctgctctttttactc 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_b19.g1 MSMg01no354_b19.g1 CHROMAT_FILE:
MSMg01no354_b19.g1 PHD_FILE: MSMg01no354_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:10 2005
         (488 letters)



>mm_chr4_50413881_50414768
          Length = 888

 Score =  752 bits (389), Expect = 0.0
 Identities = 407/413 (98%)
 Strand = Plus / Minus

                                                                       
Query: 76  tgctttcacctgaatttgccctgcattgtttatcattatgtttatatgtactttatgtaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tgctttcacctgaatttgccctgcattgtttatcattatgtttatatgtactttatgtaa 829

                                                                       
Query: 136 ggaagagtcagagagatagggagaaagaaagaaagagagaggagaaagagaaagactgtg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ggaagagtcagagagatagggagaaagaaagaaagagagaggagaaagagaaagactgtg 769

                                                                       
Query: 196 tgttaattaaaagaagttatagtatttactcatatataaaactttattatttttaacatc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 768 tgttaattaaaagaagttatagtatttactcatatataaaactttattatttttaacatt 709

                                                                       
Query: 256 tttataaaagtatatattatgcattagaaaaccttgtatatagtaaatactttctggaat 315
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 708 tttataaaagtatatattatgcattagaaacccttgtatatagtaaatactttctggaat 649

                                                                       
Query: 316 cttacagttgattactgcttactgatccacttggcagtgggatgtgggagagtgaagcct 375
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 648 cttacagttgattactgcttactgatccacttggcaatgggatgtgggagagtgaagcct 589

                                                                       
Query: 376 aaaaatgaggtgtactaaagtcaactttattaagagcatcagaaaatttattttaataga 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 588 aaaaatgaggtgtactaaagtcaactttattaagagcatcagaaaatttatattaataga 529

                                                                
Query: 436 gttaagggtcacatgagttaagtgtctactcataatggtaagcctcccatggt 488
           |||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 528 gttaagagtcacatgagttaagtgtctactcataatggtaagcctcacatggt 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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