Query= MSMg01no354_c11.b1 MSMg01no354_c11.b1 CHROMAT_FILE:
MSMg01no354_c11.b1 PHD_FILE: MSMg01no354_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:13 2005
(565 letters)
>mm_chr4_69824737_69825701
Length = 965
Score = 1040 bits (538), Expect = 0.0
Identities = 556/562 (98%)
Strand = Plus / Plus
Query: 4 ggaattctgctattactatttcaaggtttcctatgagaaacgaatcttacatgcagtcaa 63
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgctaaaactatttcaaggtttcctatgagaaacgaatcttacatgcagtcaa 263
Query: 64 agggtgttatcatgttggaaggataaaagagcctgtattggaagtccaaatctgtgtctc 123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 agggtgttatcatgttggaaggataacagagcctgtattggaagtccaaatctgtgtctc 323
Query: 124 atgacctgagtctctgagccttggtcttcttttctgtcaaatgcgtattattactaatta 183
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 atgacctgagtctctgagccttggtcttcttttctgtcaaatgcttattattactaatta 383
Query: 184 ttctcaatcttacatgcagaattttttgagggtttgaagagtagcctgtttataaaacaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctcaatcttacatgcagaattttttgagggtttgaagagtagcctgtttataaaacaa 443
Query: 244 ttcatatactacctggcacatactagtatacaggatgaatttactacgtaaaatctggaa 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcatatagtacctggcacatactagtatacaggatgaatttactacgtaaaatctggaa 503
Query: 304 aaataaaaaaatacttcatgtagaagggtactattgaccttggtggtagtggcgtcgaga 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaataaaaaaatacttcatatagaagggtactattgaccttggtggtagtggcgtcgaga 563
Query: 364 cttcactctccatctatctacagcatcagagaaataactccaacattcactaaccataaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttcactctccatctatctacagcatcagagaaataactccaacattcactaaccataaa 623
Query: 424 gaagaattattctccccttaaatcccagtaatgtctggggagagttgtagtccattgaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaagaattattctccccttaaatcccagtaatgtctggggagagttgtagtccattgaac 683
Query: 484 agttcagcttatctcctgccacagcaatagaataaccatggtttagttattcatggttta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agttcagcttatctcctgccacagcaatagaataaccatggtttagttattcatggttta 743
Query: 544 gttcactgcaaaggaaggaatg 565
||||||||||||||||||||||
Sbjct: 744 gttcactgcaaaggaaggaatg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_c11.g1 MSMg01no354_c11.g1 CHROMAT_FILE:
MSMg01no354_c11.g1 PHD_FILE: MSMg01no354_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:13 2005
(472 letters)
>mm_chr4_69964269_69965137
Length = 869
Score = 833 bits (431), Expect = 0.0
Identities = 465/487 (95%), Gaps = 18/487 (3%)
Strand = Plus / Minus
Query: 1 catctgccaaacaaatggacccttatgattattttgaaggggaggtaggttcaagtttca 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 627 catctgccaaacaaatggacccttatgattacgttgaaggggaggtaggttcaagtttca 568
Query: 61 taggcccttctgccacatgaaggctgcttcacagtgaaccgtcctcagcatacaagcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 taggcccttctgccacatgaaggctgcttcacagtgaaccgtcctcagcatacaagcagg 508
Query: 121 agagaatcaacagaaaaccacatttcctccaatgtctgttggtttgtgtgtgtgtgtttt 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaagaatcaacagaaaaccacatttcctccaatgtctgttggtttgtgtgtgtgtgtttt 448
Query: 181 cattgatggagctgaaggagaagtggagcttgagtctgtttcctacaaaagcccagcaac 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cattgatggagct---ggagaagtggagcttgagtctgtttcctacaaaagcccagcaac 391
Query: 241 agctcccaaccactctaggaaaatgtgacataaaagcttatgagcccttgccccagaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agctcccaaccactctaggaaaatgtgacataaaagcttatgagcccttgccccagaaaa 331
Query: 301 atccatatatttatacatttttacagatagttacagagcagtgatgaaccctgtcaggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atccatatatttatacatttttacagatagttacagagcagtgatgaaccctgtcaggga 271
Query: 361 actgtatgtcagacgctggaagagagcgatatatttcttagtgtttaagcaggaa----- 415
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 actgtatgtcagatgctggaagagagcgatatatttcttagtgtttaagcaggaaacttt 211
Query: 416 ----------actttaaaaatgttcctgtgctttgatccactgcatagctgagcatcttt 465
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aaaaatgttcactttaaaaatgttcctgtgctttgatccactgcatagctgagcatcttt 151
Query: 466 aaggaag 472
|||||||
Sbjct: 150 aaggaag 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 869
Length adjustment: 10
Effective length of query: 462
Effective length of database: 859
Effective search space: 396858
Effective search space used: 396858
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
