Query= MSMg01no354_e06.b1 MSMg01no354_e06.b1 CHROMAT_FILE:
MSMg01no354_e06.b1 PHD_FILE: MSMg01no354_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:22 2005
(553 letters)
>mm_chr4_82932009_82932963
Length = 955
Score = 1031 bits (533), Expect = 0.0
Identities = 546/551 (99%), Gaps = 2/551 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggattatctaggctatataagacactgactcagtaaagaaaaaagttactat 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacaatctaggctatataagacactgactcagtaaagaaaaaagttactat 264
Query: 65 caagtaaaataagctggtgtttccacattataaataataactagaaaaagattaaaacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagtaaaataagctggtgtttccacattataaataataactagaaaaagattaaaacca 324
Query: 125 tatacaaccccataacccagagatagttaccgccaacactttgtaacttagaatattcgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatacaaccccataacccagagatagttaccgccaacactttgtaacttagaatattcgc 384
Query: 185 tgtttcctgtcatatggacgggacttaacaattctgttttttcatcttttatatttgctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtttcctgtcatatggacgggacttaacaattctgttttttcatcttttatatttgctc 444
Query: 245 tccatgcaatgtattatcttcatgctcatggcttttcctgggatcacgggaacaaatgtc 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 tccatgcaatgtattatcttcatgctcatggcttttcctgggatcacgtgaacaaatgtc 504
Query: 305 atcccaggtaagaaactgaggacaaaacaaagaaaccactcgagccaagtcttgcttgat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcccaggtaagaaactgaggacaaaacaaagaaaccactcgagccaagtcttgcttgat 564
Query: 365 gactgaatgagttcactggggtcactcacagaagactccaaggtaagtcacccctaacag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gactgaatgagttcactggggtcactcacagaagactccaaggtaagtcacccctaacag 624
Query: 425 ttctacccagtgtgggtgagaactcaggagggactgt--ctacagtgtcctggccaacct 482
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 625 ttctacccagtgtgggtgagaactcaggagggactgtgtctacagtgtcctggccaacct 684
Query: 483 ataggcacctctgtctcttcttccaccaactgttttctgcttatacaactttagggaggg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataggcacctctgtctcttcttccaccaactgttttctgcttatacaactttagggaggg 744
Query: 543 gctttgtgagt 553
|||||||||||
Sbjct: 745 gctttgtgagt 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 955
Length adjustment: 10
Effective length of query: 543
Effective length of database: 945
Effective search space: 513135
Effective search space used: 513135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_e06.g1 MSMg01no354_e06.g1 CHROMAT_FILE:
MSMg01no354_e06.g1 PHD_FILE: MSMg01no354_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:22 2005
(495 letters)
>mm_chr4_83112946_83113841
Length = 896
Score = 951 bits (492), Expect = 0.0
Identities = 495/496 (99%), Gaps = 1/496 (0%)
Strand = Plus / Minus
Query: 1 tttcccaacagatggtagcaatgccccacagcttggcttgtgatgaatactctagtccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tttcccaacagatggtagcaatgccccacagcttggcttgtgatgaatactctagtccat 637
Query: 61 taaaacattgccgcagaagttgattaaagagagtcacattatcacttttaacatggacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 taaaacattgccgcagaagttgattaaagagagtcacattatcacttttaacatggacat 577
Query: 121 agaggaggctggagaaattagtcattgggcagtttcattgtatgactgtgtccgtggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agaggaggctggagaaattagtcattgggcagtttcattgtatgactgtgtccgtggtgt 517
Query: 181 cagta-cacatggagttttaaagaattaccactgtgctccatgtctggggaaatgtcatg 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cagtagcacatggagttttaaagaattaccactgtgctccatgtctggggaaatgtcatg 457
Query: 240 tagacatcgggctaaatacaagaacaatttcaaaggagaaatggtttctgcttgtgacaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tagacatcgggctaaatacaagaacaatttcaaaggagaaatggtttctgcttgtgacaa 397
Query: 300 ctattaagtttgaaataattgtggcttcttttgtctccaaattcatctctccaaatcctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctattaagtttgaaataattgtggcttcttttgtctccaaattcatctctccaaatcctg 337
Query: 360 aaaagagaatctagtgagcttttacttttttcactttcagattatcacattctgataagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaaagagaatctagtgagcttttacttttttcactttcagattatcacattctgataagg 277
Query: 420 attagtattgatttgataatttggaaataatcttgagttgttcttcctaatatggaatac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attagtattgatttgataatttggaaataatcttgagttgttcttcctaatatggaatac 217
Query: 480 aacactgaaaatcaac 495
||||||||||||||||
Sbjct: 216 aacactgaaaatcaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space: 429710
Effective search space used: 429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
