BAC Information

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BAC

Clone NameMSMg01-354F24
Chromosome4 (Build37)
Map Location 72,759,576 - 72,759,965
singlet/doubletsinglet
Overlap genenone
Upstream geneTle1, Aldoa-ps2, EG384113, LOC667713, LOC100039698
Downstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354F24.T7 (MSMg01no354_f24.b1)MSMg01-354F24.TJ (MSMg01no354_f24.g1)
ACCAG465020AG465021
length767781
length of high quality
(start - end)		500 (49 - 548)390 (80 - 469)
definitionCHROMAT_FILE: MSMg01no354_f24.b1 PHD_FILE: MSMg01no354_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:30 2005CHROMAT_FILE: MSMg01no354_f24.g1 PHD_FILE: MSMg01no354_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGTTTTGGTCCAGTTTATTTGGTGTTCTCTTACTCTTCTTT
TTCATTAATAGCTACCTTTTTCTTTAGGTTATAATAAGTTTCTTCTGTGA
TTTGTTGAAAATATTTTCTATGCCTCCGAGATAGGTTTATTCTCCTTCCT
CTATCCCAATTATTTTTAAATTTGACTTTTTTATAACATACCAGTGTGGT
GGTTTGAATATGCTATGCCAAGGGAGAGGCATTATTAGGAGATATGGACT
ACTTGGAGTAGGTGTGGCCTTGTTGTAGAAAATATGGTGATTTTGGGCTG
GGCTTTGAGAGAACTTCCCCCTACTGGCAGCCAGTTTTTTTCTTTTCTGT
TTGCCTTCAGAATAAGATGTAGAACTTTCAGCTCCTCCAATGCCATACCT
ATGTGGATACTACCATGTTTTCTGCCATGGTACCAGACTATCCTTGTGGG
ATTATAGAAGACTGTGTTGCTGAGGGTGATTTGAATTGTGAAGCCTGGCT
CTAGAGGTTTCAGAGAAGGATAATTTTAGTATGTGTCCTAGAGATGGTTC
CTTTGATATTTTGGTGAAGAAAATTTGTGCTATCTTGCCCATGGCTTTAT
AGTCCGCCCGAGGTTTTATGGAACATATCCCCATTTTTGTTTTTATCCTT
AAAGGGTCTAAATAACCTCTTTCAAAATTCTTTGTTTATCTCCCTCCACA
ACTTTTTTTTTTTTTCN

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCTCAGAAATCATGTTGT
GTGTAATATCTAAGGCAATCTGAAAGTCCATAAATGGTTGTTGTAGCAGA
AGAATCATGTAACAGAAAGGCAAAGCCATATATAGTATTTATGTTAATAA
GGGAAAAACTAACATGCTGTCTTTTCTATAATAATCCTCATTAACCCCTT
TTGAGGACTGTTCAACTTCATACTGCCTGAACAGGTAAAGCCAGGTAAAG
GCTGTAATGATGCACTGTTCTTTTCTGAGAGGTACCTTTCAGCAGACTGA
TTGAACTCTAAGCTAAAGAATGGTATCCTCATCACTACAATAATCATGAG
ATATTTACCATGAGGCATAGATGTATACTTTTGACAGAAGATGTTAGAAC
AAGAGTAGGAAACAGATTGATTTACAGAGTGGTTGTACCAGTTGGCAATC
CCACCGCAATGTAGGATTGTCCCTCTTTCTCCATATCCTCTTCCACATGT
GTTGTCACCTGAGGTTTGATCTTACCCATTTGAACTGGGGAAGGGAAAAC
CCCACGCTGGTTTTGGTTGGATTTCTCCAAACCCACGGAGAAATTTTTTT
TGGGGTTTTCCCCCTTCACCATTTTTTGTGTGAATTCCCAGTTACTCTTT
ACCCCACCTTTATTTTGTGGTTGGGGTTTGTTCTCTATTTATTTCCTCTC
TCTTCCCTTTTTTTCTCATTCATTTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_f24.g1 MSMg01no354_f24.g1 CHROMAT_FILE:
MSMg01no354_f24.g1 PHD_FILE: MSMg01no354_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:30 2005
         (390 letters)



>mm_chr4_72759376_72760165
          Length = 790

 Score =  754 bits (390), Expect = 0.0
 Identities = 390/390 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgctcagaaatcatgttgtgtgtaatatctaaggcaatctgaaagtccataaatggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgctcagaaatcatgttgtgtgtaatatctaaggcaatctgaaagtccataaatggtt 260

                                                                       
Query: 61  gttgtagcagaagaatcatgtaacagaaaggcaaagccatatatagtatttatgttaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtagcagaagaatcatgtaacagaaaggcaaagccatatatagtatttatgttaata 320

                                                                       
Query: 121 agggaaaaactaacatgctgtcttttctataataatcctcattaaccccttttgaggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggaaaaactaacatgctgtcttttctataataatcctcattaaccccttttgaggact 380

                                                                       
Query: 181 gttcaacttcatactgcctgaacaggtaaagccaggtaaaggctgtaatgatgcactgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcaacttcatactgcctgaacaggtaaagccaggtaaaggctgtaatgatgcactgtt 440

                                                                       
Query: 241 cttttctgagaggtacctttcagcagactgattgaactctaagctaaagaatggtatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttttctgagaggtacctttcagcagactgattgaactctaagctaaagaatggtatcct 500

                                                                       
Query: 301 catcactacaataatcatgagatatttaccatgaggcatagatgtatacttttgacagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcactacaataatcatgagatatttaccatgaggcatagatgtatacttttgacagaa 560

                                         
Query: 361 gatgttagaacaagagtaggaaacagattg 390
           ||||||||||||||||||||||||||||||
Sbjct: 561 gatgttagaacaagagtaggaaacagattg 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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