Query= MSMg01no354_n19.b1 MSMg01no354_n19.b1 CHROMAT_FILE:
MSMg01no354_n19.b1 PHD_FILE: MSMg01no354_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:08 2005
(512 letters)
>mm_chr4_87640212_87641123
Length = 912
Score = 764 bits (395), Expect = 0.0
Identities = 417/429 (97%), Gaps = 8/429 (1%)
Strand = Plus / Minus
Query: 92 taaaataaaataaaataaaacccagcttaggtttttatcctagaagcttaatatatcaac 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 taaaataaaataaaataaaacccagcttaggtttttatcctagaagcttaatatatcaac 838
Query: 152 tggctcagaaatcttgatcccaaaatc--------ttttttttttttttttggctttttg 203
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 837 tggctcagaaatcttgatcccaaaatcttttttttttttttttttttttttggctttttg 778
Query: 204 agacaggatttctcagtgacttggctgtcctagaactcactctgaagaccagtctagcct 263
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 777 agacaggatttctcagtgacttggctgtcctagaactcactctgtagaccagtctagcct 718
Query: 264 ctaattcatagagatccacctgcctctgcttcccaaggtgggactaaaaacatgagtcac 323
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 717 ctaattcatagagatccacctgcctctgcctcccaaggtgggactaaaaacatgagtcac 658
Query: 324 taccacctggctgatcccaaattcttacccagttgagttgggaacctctgtctctccaat 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 taccacctggctgatcccaaattcttacccagttgagttgggaacctctgtctctccaat 598
Query: 384 gaaagtaggtgagtgctgtgacacctatatacatcattaccccaaagctgaaaacagaca 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaaagtaggtgagtgctgtgacacctatatacatcattaccccaaagctgaaaacagaca 538
Query: 444 aagaaaagcaaaatgggtgttacttccaggcaatggaattatctttcagcaatataaaga 503
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aagaaaagcaaaaagtgtgttacttccaggcaatggaattatctttcagcaatataaaga 478
Query: 504 aatgggctg 512
|||||||||
Sbjct: 477 aatgggctg 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_n19.g1 MSMg01no354_n19.g1 CHROMAT_FILE:
MSMg01no354_n19.g1 PHD_FILE: MSMg01no354_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:09 2005
(544 letters)
>mm_chr4_87490652_87491594
Length = 943
Score = 992 bits (513), Expect = 0.0
Identities = 534/541 (98%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 4 caggtcttaaaaaactgtttctgaatcattaacctcaccattcaatgctactgagcagcg 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 caggtcttaaaaaactgtttctgaatcattaacctcaccattcaatgctactgagcagct 263
Query: 64 cagactaattaccactctaggtgaggcttacacatgttggataattcaaatctctttgcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagactaattaccactctaggtgaggcttacacatgttggataattcaaatctctttgcc 323
Query: 124 taaagatgattaagagcaatggagtatcgagtaatccaaagagagagcacgtgcataatt 183
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 324 taaagatgattaagagcaatggagtatc-agtactccaaagagagagcacgtgcataatt 382
Query: 184 caaatctcaaatacggaaagcaaatgactacttaaacatgaattcacaggcatccgcact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 383 caaatctcaaatacggaaagcaaatgactacttaaacatgaattcacaggcatccacact 442
Query: 244 agctctgcaacctgggatgctaaggtacagcgttttcatccatgccgttcgactgaatgc 303
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 443 agctctgcaacctgggatgctaaggtacagcgttttcatccatgccgtttgactgaatgc 502
Query: 304 ctctttgttttaattttctggggcaaaatggtctctttactgtgcaattccatctaatgg 363
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 503 ctctttgttttaattttctggggcaaaattgtctctttagtgtgcaattccatctaatgg 562
Query: 364 ggcttgtctgtaactctagcacatagcctaagaaagagagaggaggtgagaaaagaactg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggcttgtctgtaactctagcacatagcctaagaaagagagaggaggtgagaaaagaactg 622
Query: 424 gacatagaagggctttctgattatgggtggctttcatttccctgtcctcttcctactgac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gacatagaagggctttctgattatgggtggctttcatttccctgtcctcttcctactgac 682
Query: 484 aactcaatgctgattcttcctgtttcctcccctgggctttcttctgtcccgctctaaccg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aactcaatgctgattcttcctgtttcctcccctgggctttcttctgtcccgctctaaccg 742
Query: 544 g 544
|
Sbjct: 743 g 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space: 498222
Effective search space used: 498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
