BAC Information

Click to search

BAC

Clone NameMSMg01-355C14
Chromosome4 (Build37)
Map Location 87,588,963 - 87,756,133
singlet/doubletdoublet
Overlap geneMllt3, BC057079
Upstream geneSlc24a2
Downstream genePtplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355C14.T7 (MSMg01no355_c14.b1)MSMg01-355C14.TJ (MSMg01no355_c14.g1)
ACCAG465615AG465616
length762738
length of high quality
(start - end)		284 (51 - 334)503 (83 - 585)
definitionCHROMAT_FILE: MSMg01no355_c14.b1 PHD_FILE: MSMg01no355_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:32 2005CHROMAT_FILE: MSMg01no355_c14.g1 PHD_FILE: MSMg01no355_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,588,963 - 87,589,236)(87,755,631 - 87,756,133)
sequence
NTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATTCATCACAACACAGCTAATCTCCAGATGAAGCGCCTA
CTAAGCACTTCGACTATGTTGCCTCGGCTCTATGCTCAACTTCCCCCTGC
TTATCTTCTTAAATGTGCTCCCCAAAAGAGACAGGAAGACTTATTTTCCA
AAACGGGAACCGAAAACAAATAATAGCCCCATACAAACATCTTCAGTCAG
AAGGGACCGGACTGCAGCAGGGCTAAGGTATCCTCAACATTTTGGTTTTG
TTGTTATTGGGTTTTTTTTTGGTGGTGGGGGGGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNN
NCNNNNNCNNCN

NNNNNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTGAAAAAGGTGAGG
GTAACTATTCACCTAAGTGCTGACTCAGACACAACCACGCTGAGATTGCT
TCACTTCCACTAATGAATGCTGGCTGGCAGGTAACCACACCATGTGAAGT
TCAAAGCACAGCTCAAAGGAACAGGAAGTACACAGATTTGGGTACATAAA
CCCAGGGTTTGGATAACAGTGGGATGTTCAGAAACAAACAAATGTCCAAA
AGCACAATGATGTAGTGGAAGCTACTGTACAGTCTTTCTCAGTTCCTGCA
GCTACCTCGGGGCTTAACCTACAACTTGACATTGTATTCTAAGCAAAAAG
AATATGTATCCATGGTATAGAGGAGACAAACTAGAGAGGTAGGCTCAGTC
TCTCACATCCCTCCCAGCTCCTCAAGACATGGAGGACTTGAATTGTGAAG
GGGCCATTTCCCTCTGGGAAGCAGCTGCATGTGCTCACCCCTGGATGCCA
ATTAGAAAGTGGATCAAGCAGGCCGAGTTCTCCCCAAAGCTACGGAATAA
TTATCCTGCACTTCTGAGTCTCTGGAGTTTCTGTGTCTTATTCATCACTG
CAGAGCTATTCATATCAGCAGCTAATAAATGCCTGTTGAAAGCCCTGTTT
AATACAGTATCTAATATAAAATAAGGTCAAAAATGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_c14.b1 MSMg01no355_c14.b1 CHROMAT_FILE:
MSMg01no355_c14.b1 PHD_FILE: MSMg01no355_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:32 2005
         (284 letters)



>mm_chr4_87588759_87589442
          Length = 684

 Score =  530 bits (274), Expect = e-155
 Identities = 274/274 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattcatcacaacacagctaatctccagatgaagcgcctactaagcacttcgac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattcatcacaacacagctaatctccagatgaagcgcctactaagcacttcgac 264

                                                                       
Query: 65  tatgttgcctcggctctatgctcaacttccccctgcttatcttcttaaatgtgctcccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgttgcctcggctctatgctcaacttccccctgcttatcttcttaaatgtgctcccca 324

                                                                       
Query: 125 aaagagacaggaagacttattttccaaaacgggaaccgaaaacaaataatagccccatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagagacaggaagacttattttccaaaacgggaaccgaaaacaaataatagccccatac 384

                                                                       
Query: 185 aaacatcttcagtcagaagggaccggactgcagcagggctaaggtatcctcaacattttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaacatcttcagtcagaagggaccggactgcagcagggctaaggtatcctcaacattttg 444

                                             
Query: 245 gttttgttgttattgggtttttttttggtggtgg 278
           ||||||||||||||||||||||||||||||||||
Sbjct: 445 gttttgttgttattgggtttttttttggtggtgg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no355_c14.g1 MSMg01no355_c14.g1 CHROMAT_FILE:
MSMg01no355_c14.g1 PHD_FILE: MSMg01no355_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:32 2005
         (503 letters)



>mm_chr4_87755431_87756333
          Length = 903

 Score =  934 bits (483), Expect = 0.0
 Identities = 498/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattgaaaaaggtgagggtaactattcacctaagtgctgactcagacacaaccacgctg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcattgaaaaaggtgagagtaactattcacctaagtgctgactcagacacaaccacgctg 644

                                                                       
Query: 61  agattgcttcacttccactaatgaatgctggctggcaggtaaccacaccatgtgaagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 agattgcttcacttccactaatgaatgctggctggcaggtaaccacaccatgtgaagttc 584

                                                                       
Query: 121 aaagcacagctcaaaggaacaggaagtacacagatttgggtacataaacccagggtttgg 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 583 aaagcacagctcaaaggaacaggaagtgcacagatttgggtacataaacccagggtttgg 524

                                                                       
Query: 181 ataacagtgggatgttcagaaacaaacaaatgtccaaaagcacaatgatgtagtggaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ataacagtgggatgttcagaaacaaacaaatgtccaaaagcacaatgatgtagtggaagc 464

                                                                       
Query: 241 tactgtacagtctttctcagttcctgcagctacctcggggcttaacctacaacttgacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tactgtacagtctttctcagttcctgcagctacctcggggcttaacctacaacttgacat 404

                                                                       
Query: 301 tgtattctaagcaaaaagaatatgtatccatggtatagaggagacaaactagagaggtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgtattctaagcaaaaagaatatgtatccatggtatagaggagacaaactagagaggtag 344

                                                                       
Query: 361 gctcagtctctcacatccctcccagctcctcaagacatggaggacttgaattgtgaaggg 420
           ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 343 gctcagtctctaacatccctcccagctcctcaaaacatggaagacttgaattgtgaaggg 284

                                                                       
Query: 421 gccatttccctctgggaagcagctgcatgtgctcacccctggatgccaattagaaagtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gccatttccctctgggaagcagctgcatgtgctcacccctggatgccaattagaaagtgg 224

                                  
Query: 481 atcaagcaggccgagttctcccc 503
           |||||||||||||||||||||||
Sbjct: 223 atcaagcaggccgagttctcccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |