Query= MSMg01no355_i16.b1 MSMg01no355_i16.b1 CHROMAT_FILE:
MSMg01no355_i16.b1 PHD_FILE: MSMg01no355_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:01 2005
(536 letters)
>mm_chr4_40191856_40192791
Length = 936
Score = 946 bits (489), Expect = 0.0
Identities = 522/533 (97%), Gaps = 1/533 (0%)
Strand = Plus / Plus
Query: 5 gaattcctctttgatctctaaataagtatgctaggaattttcctaagtagctttgaggta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctttgatctctaaataagtatgctaggaattttcctaagtagctttgaggta 264
Query: 65 tgacttctgattatgacctgctgtggtgacagacactgcaatacttagccttctgaaatt 124
| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taacttctgattctgatctgctgtggtgacagacactgcaatacttagccttctgaaatt 324
Query: 125 tagtgcaacttgtttagggctcggcatataaaatatctttttaattagacatttttcttt 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 tagtgcaacttgtttagggctcggcatataaaatatttttttaattagacatttttcttt 384
Query: 185 atatacatttcaaatgctatcctgaaagttccctataccctccccctaccctgctcccca 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 atatacatttcaaatgctatcctgaaagttccctataccctccccccaccctgctcccca 444
Query: 245 accacccactcccacttcttggccctggcattcccctgtactgggcatataaagtttgca 304
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 actacccactcccacttcttggccctgacattcccctgtactgggcatataaagtttgca 504
Query: 305 ataccaagggaactctcttcccagtgatggcagactaggccatcttctgctacatatgca 364
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 505 ataccaagggaactctcttcccagtgatggccgactaagccatcttctgctacatatgca 564
Query: 365 gctagagatacgagctctggggg-tactggttagttcatattgttgttccacctataggg 423
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctagagatacgagctctggggggtactggttagttcatattgttgttccacctataggg 624
Query: 424 ttgcagaccccttcagctccttgggtgctttctctagcttctccattgggggccctgtgt 483
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 ttgcagaccccttcagctccttgggtactttctctagcttctccattgggggccctgtgt 684
Query: 484 tccatcttatagatgactgtgagcatccacttctgtatttgccaggcattagc 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccatcttatagatgactgtgagcatccacttctgtatttgccaggcattagc 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_i16.g1 MSMg01no355_i16.g1 CHROMAT_FILE:
MSMg01no355_i16.g1 PHD_FILE: MSMg01no355_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:01 2005
(495 letters)
>mm_chr4_40346588_40347482
Length = 895
Score = 874 bits (452), Expect = 0.0
Identities = 487/504 (96%), Gaps = 9/504 (1%)
Strand = Plus / Minus
Query: 1 tacagacttttgcttacactgctggggtaaatggtaggggcatcttttatctgtccctac 60
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 814 tacagacttttgcttatactgctggggtaaatggcaggggcatcttttatctgtccctac 755
Query: 61 agaaggctgagggctctgtgtttttgtatggctgctttatctttgcagca---------t 111
|||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 754 agaaggttgagggctctgtgtttttgtatggctgctttatctttgcagcattggggccct 695
Query: 112 tccccctttctcaagccagtagagatgggacatttcaaacttctccataggagaaaaagg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tccccctttctcaagccagtagagatgggacatttcaaacttctccataggagaaaaagg 635
Query: 172 caactttgctccacactgtgaactgaggggtgagagaatgcatgcctaccctccccaagc 231
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 634 caactttgctccacactgtaaactgagggttgagagaatgcatgcctaccctccccaagc 575
Query: 232 tgactgctctaatgactctaaggttcccccatcagtctccagcagactggctttataaat 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 574 tgactgctctaatgactctaaggttcccccatcagtctccagcagactggctttataact 515
Query: 292 gaatcccaatgtaactgactctccatttctgaactattcaaaatttaatttcagtaaact 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaatcccaatgtaactgactctccatttctgaactattcaaaatttaatttcagtaaact 455
Query: 352 gctatcatgaagtgtgcattatgcaagattcctggcacaagagaagtaggtttgcctgga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gctatcatgaagtgtgcattatgcaagattcctggcacaagagaagtaggtttgcctgga 395
Query: 412 gcctccacagcccttgactcatgtttaaatagcatccatgtctgtcctccaagtgtctat 471
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 394 gcctccacagcccttgactcatgtttaaatagcatccatgtctgtcctcccagtgtctat 335
Query: 472 ccactcaactgtgcatgattgtag 495
||||||||||||||| ||||||||
Sbjct: 334 ccactcaactgtgcacgattgtag 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
