BAC Information

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BAC

Clone NameMSMg01-355N14
Chromosome4 (Build37)
Map Location 74,899,860 - 74,900,240
singlet/doubletsinglet
Overlap genenone
Upstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847
Downstream gene3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355N14.T7 (MSMg01no355_n14.b1)MSMg01-355N14.TJ (MSMg01no355_n14.g1)
ACCAG466138AG466139
length770772
length of high quality
(start - end)		518 (46 - 563)478 (77 - 554)
definitionCHROMAT_FILE: MSMg01no355_n14.b1 PHD_FILE: MSMg01no355_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:24 2005CHROMAT_FILE: MSMg01no355_n14.g1 PHD_FILE: MSMg01no355_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACACTTACGAAATCAGGGACATAAATCACAAAATCACAAAACAC
AAATCATATGAATATTAAGTACAAAAGAAGAAAAAAAACAGTTCAAATGC
ACAAAAATATTTTCAACAAAATCATAAAGGGTAACTTAATCCAAGGGAAG
AGATGCTTATCAAGTTCCAAGGAGCATATCAAATATTAAATAAACATGAT
CACAAGCAAATTCCTACCCCATATAATAATCATAATTATTAAATTACAGA
ACAAAAAGAGTATGTTGAAAGTGGCAAGATAGAAACATCAACTTACATAC
AAAGGCTGGTCAGCAGAGTGACATTAGTCTTTGAAATGGACACTATGAAA
ATCAGAAGGGATTTAACAAATGTTTTGTAAGTTATTAAAGCAAAGATAAT
AGTCCATACTACTACTCTCAGCAAAATTATGCATCTTAATTAAGGGGAAA
AGAAAAAATGTTCCATTATAAAAGCAGATTTAAGGAATTTGTGACCAATG
AACAACAAGTTCAACGGGGAATGTTGCAAAAAATAATTAGTTCTGAAGAG
AAAGTTTAAAATGTCCAACAAAGCACAAGAACAACCAAAGAACTCCCGAA
TATTGAACAGCATTCTAATAAAAGACTATCCAGACCACTAAATTACGGGA
CTTAAGTTCCATTATTCCATAATAACTTGCCAAATTAAAGGGCCCAATCC
CCCTAACAAAAAAAAGGAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGCTGGAGCTAGAAGGAAAAGT
TCTTTACAACTGTGCTAGGAATGTGGGAACTTAGAGATTCTTTTTTTCTT
TTCTTTTCTTTTTTTTTTTCAAGACAGGTTTTCTCTGTGTAGCCCTGGGT
GTCCTGGAATTCGTGCTGTAAACCAGGCTGGCCTCAAACTCAGAAATCTG
CCTGCCTCTGCCTCTCAAGCGCTGGGATAAAAGGCATGCACCCCCCACTG
CCTGGCAATGGCAGTGTTGCTTACCAAATAGGAAAAAAAAACAAAAAAAC
AAAAAAAAAAAACAAAAAAAAAACTTATATGGAGATTCAAGTGTGAGAGA
AAAATTAAATCAGGGCATGTCAAAAGAGACAGAGTGGTATTTATGTGACA
GAGGATTCTAATCTATTGCCTCTACCCCTTTAATACTGCATTAAGCAACT
CATATGGGCAGAAAGTCCTTTGGGTTTAATCATTTTTCCAAGGTCTTAAT
TCAACCTTAATAATAGCTATGTTTCAACAAGAAATGCTGAAGTGACACAT
TCCACTTTGNGGGATTTCATTATGTTGATTACATATTGAACAAAAAATTC
TGACTTAAAAGTTAAAATCTTAAATATTTTTTAGTAAAAAAAAATGCCTT
GCCTAGAAAAAAAAAAACATTTTTGCCAAAAAGAAAAATTGAAGAAAATG
CCCAAAATCCTTTTTATTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_n14.g1 MSMg01no355_n14.g1 CHROMAT_FILE:
MSMg01no355_n14.g1 PHD_FILE: MSMg01no355_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:24 2005
         (478 letters)



>mm_chr4_74899363_74900240
          Length = 878

 Score =  609 bits (315), Expect = e-178
 Identities = 355/381 (93%), Gaps = 22/381 (5%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgggtgtcctggaattcgtgctgtaaaccaggctggcctcaaactcagaaatctgcctgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tgggtgtcctggaattcgtgctgtaaaccaggctggcctcaaactcagaaatctgcctgc 819

                                                                       
Query: 180 ctctgcctctcaagcgctgggataaaaggcatgcaccccccactgcctggc--------- 230
           ||||||||||||||| |||||||||||||||||||||||||||||||||||         
Sbjct: 818 ctctgcctctcaagcactgggataaaaggcatgcaccccccactgcctggcaagaactta 759

                                                                       
Query: 231 --------aatggcagtgttgcttaccaaata-ggaaaaaaaaacaaaaaaacaaaaaaa 281
                   |||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct: 758 aagattctaatggcagtgttgcttaccaaatagggaaaaaaaaaaaaaaaaaaaaaaaaa 699

                                                                       
Query: 282 aaaaacaaaaaaaaaa----cttatatggagattcaagtgtgagagaaaaattaaatcag 337
           ||||| ||||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaaaaaaaaaaaaaaaaaaccttatatggagattcaagtgtgagagaaaaattaaatcag 639

                                                                       
Query: 338 ggcatgtcaaaagagacagagtggtatttatgtgacagaggattctaatctattgcctct 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ggcatgtcaaaagagacagagtggtatttatgtgacagaggattctaatctattgcctct 579

                                                                       
Query: 398 acccctttaatactgcattaagcaactcatatgggcagaaagtcctttgggtttaatcat 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 acccctttaatactgcattaagcaactcatatgggcagaaagtcctttgggtttaatcat 519

                                
Query: 458 ttttccaaggtcttaattcaa 478
           |||||||||||||||||||||
Sbjct: 518 ttttccaaggtcttaattcaa 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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