Query= MSMg01no355_n24.b1 MSMg01no355_n24.b1 CHROMAT_FILE:
MSMg01no355_n24.b1 PHD_FILE: MSMg01no355_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:26 2005
(344 letters)
>mm_chr4_142305749_142306492
Length = 744
Score = 574 bits (297), Expect = e-168
Identities = 319/331 (96%), Gaps = 8/331 (2%)
Strand = Plus / Plus
Query: 4 ggaattctcaaacgtggcagctagcagatgtgttctcagagcctccaaatgcaggcacag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaaacgtggcagctagcagatgtgttctcagagcctccaaatgcaggcacag 263
Query: 64 acggagcgctctgcatagaaattggccggtaaacttcacgactgggggacataaagctct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acggagcgctctgcatagaaattggccggtaaacttcacgactgggggacataaagctct 323
Query: 124 tttatttgcagaagttggagactgcgatttgagtgtgtgaaattgccaatagcctggtaa 183
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 tttatttacagaagttggagactgcgatttgagtgggtgaaattgccaatagcctggtaa 383
Query: 184 atattttgacccaccagcagccttaatggggaattgaaatgttttaaaacgcagtgaggt 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atagtttgacccaccagcagccttaatggggaattgaaatgttttaaaacgcagtgaggt 443
Query: 244 acaccgtctctctctctctctctctctctctctctctctctctctctctctctctctctc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaccgtctctctctctctctctctctctctctctctctctctctctctctctctctct- 502
Query: 304 tctctctgtgtgtgtgtgtgtgtgagtgtgt 334
||||||||||||||||| ||||||
Sbjct: 503 -------gtgtgtgtgtgtgtgtgtgtgtgt 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_n24.g1 MSMg01no355_n24.g1 CHROMAT_FILE:
MSMg01no355_n24.g1 PHD_FILE: MSMg01no355_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:26 2005
(374 letters)
>mm_chr4_142482766_142483539
Length = 774
Score = 659 bits (341), Expect = 0.0
Identities = 367/378 (97%), Gaps = 4/378 (1%)
Strand = Plus / Minus
Query: 1 ttccccttttctcctccccttatggaaatctgttaacataaaatgcttgaaattgttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttccccttttctcctccccttatggaaatctgttaacataaaatgcttgaaattgttttt 418
Query: 61 ggcacgatgacttagccatataatcctttacagagaaagacaatagataattggacaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggcacgatgacttagccatataatcctttacagagaaagacaatagataattggacaatt 358
Query: 121 agagagaacatttcacatgaaattctttactctgccatgaatgaaactggaggggttggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agagagaacatttcacatgaaattctttactctgccatgaatgaaactggaggggttggc 298
Query: 181 tccaagtgggaaaggcacctaaattcccctcatttggtaatcaagggtttctttcttcct 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tccaagtgggaaaagcacctaaattcccctcatttggtaatcaagggtttctttcttcct 238
Query: 241 cttttattgtttggcagttttattctttttgttttcattaatttatttattcactttaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 cttttattgtttggcagttttattctttttgttttcattaatttatttattcactttaca 178
Query: 301 ttcccattacattccccc----tcccagncccacccccatagccctctccccctactatc 356
|||||||||||| ||||| |||||| ||||||| |||| |||||||||||||||| |
Sbjct: 177 ttcccattacatacccccctcctcccagtcccaccctcataaccctctccccctactacc 118
Query: 357 ccttctccttctctgagg 374
||||| ||||||||||||
Sbjct: 117 ccttccccttctctgagg 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
