Query= MSMg01no355_p07.b1 MSMg01no355_p07.b1 CHROMAT_FILE:
MSMg01no355_p07.b1 PHD_FILE: MSMg01no355_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:33 2005
(296 letters)
>mm_chr4_29430219_29430914
Length = 696
Score = 547 bits (283), Expect = e-160
Identities = 286/287 (99%)
Strand = Plus / Plus
Query: 10 gaattctccaaaatggcttatttaccttaatagttgtgctgatgcctctgtaagtcagga 69
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattctccaaaatgggttatttaccttaatagttgtgctgatgcctctgtaagtcagga 269
Query: 70 tgctttataaaagaattgagcttcaattgctaaagtgagacttttctgttttcacactaa 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgctttataaaagaattgagcttcaattgctaaagtgagacttttctgttttcacactaa 329
Query: 130 aggagaaaattctatctttctataattccccagatgtgtcatgttctagtttattttttc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aggagaaaattctatctttctataattccccagatgtgtcatgttctagtttattttttc 389
Query: 190 aagtaagtgttatatggtgaatacaatattaatttagcaacttattctaacaatagaaat 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagtaagtgttatatggtgaatacaatattaatttagcaacttattctaacaatagaaat 449
Query: 250 gttattagaggaacagagtattcacttatcctattgaaaatttgcag 296
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gttattagaggaacagagtattcacttatcctattgaaaatttgcag 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no355_p07.g1 MSMg01no355_p07.g1 CHROMAT_FILE:
MSMg01no355_p07.g1 PHD_FILE: MSMg01no355_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:33 2005
(462 letters)
>mm_chr4_29595195_29596057
Length = 863
Score = 864 bits (447), Expect = 0.0
Identities = 459/463 (99%), Gaps = 1/463 (0%)
Strand = Plus / Minus
Query: 1 agaaatatatacagaaagtgtttttcatttttgtggaaaattttcaggtactgaggaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agaaatatatacagaaagtgtttttcatttttgtggaaaattttcaggtactgaggaaaa 553
Query: 61 atctgggtgttgcatttgttaggcaattatgctaatactagattaaatttcaaggcccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 atctgggtgttgcatttgttaggcaattatgctaatactagattaaatttcaaggcccat 493
Query: 121 gagtttaaaaggaggaaataattcttctcaaaaattagttattttaatcttcctatcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gagtttaaaaggaggaaataattcttctcaaaaattagttattttaatcttcctatcctt 433
Query: 181 atcagatcaatatagtcttgttttgttcagtattacatagatgtat-atttagtcatttg 239
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 432 atcagatcaatatagacttgttttgttcagtattacatagatgtataatttagtcatttg 373
Query: 240 agtatatgatcttcatttgccacttggaaaattgcaggacttttgaagaacagaaaaaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agtatatgatcttcatttgccacttggaaaattgcaggacttttgaagaacagaaaaaaa 313
Query: 300 cagtagttaactttcaatacatgctgaaagtaacaaataatggaaatttcaatatctaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cagtagttaactttcaatacatgctgaaagtaacaaataatggaaatttcaatatctaca 253
Query: 360 ctctatatacagctgcatagattgtagcgcactaaatctccatagataccagatatatat 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 252 ctctatatacagctgcatagattgtagctcactaaatctccatagataccagatatatat 193
Query: 420 atatatatatatatatatatatatatacatatatatatatata 462
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 192 atatatatatatatatatatatatatatatatatatatatata 150
Score = 91.6 bits (47), Expect = 1e-22
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 412 atatatatatatatatatatatatatatatatatacatatatatatatata 462
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 149 atatatatatatatatatatatatatatatatatatatatatatatatata 199
Score = 89.7 bits (46), Expect = 4e-22
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 412 atatatatatatatatatatatatatatatatatacatatatatatatat 461
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 151 atatatatatatatatatatatatatatatatatatatatatatatatat 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 9
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
