BAC Information

Click to search

BAC

Clone NameMSMg01-356E09
Chromosome4 (Build37)
Map Location 143,371,154 - 143,371,615
singlet/doubletsinglet
Overlap genenone
Upstream gene6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666
Downstream geneOTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356E09.T7 (MSMg01no356_e09.b1)MSMg01-356E09.TJ (MSMg01no356_e09.g1)
ACCAG466455AG466456
length749757
length of high quality
(start - end)		464 (41 - 504)433 (72 - 504)
definitionCHROMAT_FILE: MSMg01no356_e09.b1 PHD_FILE: MSMg01no356_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:57 2005CHROMAT_FILE: MSMg01no356_e09.g1 PHD_FILE: MSMg01no356_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:57 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCAGTGTCTTCCTGATGGATAACTTCAAGTATTTGCACCTGTATTGGTAA
GGCTCTGGCAGAACCTCTCAGGAGACAGCTATATCAGGTATGCACTTCTT
GCATCAGCAATAGAGTCTGGGTTTGGTGGCTGCATATGGGATGGACCCCC
AGGGGGGACAATCTTGGATGGCCTTTCAGTCTCTGCTGAACTCTTTGTCC
CTGTATTTCCTTTAGACAGAATAAATTCTGGGTTAATATTTTTGAGATGG
GTAAGTGGCCCCAACCTTTTTTCAGGGGCCAGGCCTATCCTCAGAACATT
GGCCCTACAGATGGTTTAGTGTGAAAGCTTCCCTAGGTTCCCCAGAAGTT
AGGGTTGTTAGGGAAAGGATCAGCCAGCAAGGAGATAGAAAAGGAAATTG
TGGCTGGGTGGTGAGCACGATGCGATATCCCATACATTTAATCCCATCAC
TCTGGAAGCAGAAGCAGGCGAATCCATGTGTCCCTGTATCTTTGAGGCCT
ACTATATGGACATAAGGAACTCTCGACTATCCAGAGTTTTGGTGGGGTAA
AATTAAATCCCCATTTCCCTTTTGGCCCCACCCTCGTACACTTTTCCCTG
CAGGCCCTTTGGGCTTTCTTGAATTTTTTGACGCTCACTTATTTTTCCCC
CTCCTTTTTGATCGCCTCTAAAGCTACTCGCTCCTTCGCCCTCTCCTTC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAAGGAAAATAATTTCAGGCAACCATAA
AGGCTAAAGAAATTACACTCTAGTATCTTCAGGCTATTTTAATAAGAATT
GAGAGAATGAAGAATGGTACTCTTTATAACTAACCAGTCGTTGACCACAT
CTCCCAAATTAAGGGACAGGGGGAGATTTTAAAATTGGATTCCAACCCTC
CCTACACTACTAATTGTCCACTGGGTCTTGGGTCTTCTCATGTAAAACAA
AAGGATTTCATGGGTGGAACTCTAGGGCTCTTCTAAACATCATAGTCCAT
GATTCTTCTATTGTATAGCAAGGTCTGATCCCCTGTAGATTTCCACACAC
TGAAAATATGATGCTACTAAACAGAACAGCACTGAGTAAGCCCCTGAACT
GAATAGTCTCTGTGTTTATCCCAGAAGCTTTCTCTACCCTGCCCTTTCCT
GTGCCCTAGAATGTAGGCTACATGCCCAGAGTTCAACAGCTTTGTCCCAA
TACTTAATAGGGGAGAGAAAGGTTCATTTTTGGTCATGCTCTTGTGATTT
CTCTCCACAGTCTGTCCGCCCCCAAGGGAGTGGTTCTATGGTGATATATC
CTGGTTTCCGGATCTTGGACAAAAATAATGGGCTTTTCCTGGTTTCGTAA
TTACACCTTGTCCCAACTTTTTTTTTTCTTTTTCGTGCTCCCCCGTTTTC
TGCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_e09.b1 MSMg01no356_e09.b1 CHROMAT_FILE:
MSMg01no356_e09.b1 PHD_FILE: MSMg01no356_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:57 2005
         (464 letters)



>mm_chr4_143370951_143371815
          Length = 865

 Score =  646 bits (334), Expect = 0.0
 Identities = 431/468 (92%), Gaps = 14/468 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccagtgtc--ttcctgatggataacttcaagtatttgcacctgtattggtaagg 62
           ||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcccagtgtcagt--ctgatggataacttcaagtatttgcacctgtattggtaagg 261

                                                                       
Query: 63  ctctggcagaacctctcaggagacagctatatcaggtatgcacttcttgcatcagcaata 122
           |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 262 ctctggcagagcctctcaggagacagctaaatcaggtatgcacttcttgcatcagcaata 321

                                                                       
Query: 123 gagtctgggtttggtggctgcatatgggatgga-cccccaggggggacaatcttggatgg 181
           ||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||| 
Sbjct: 322 gagtctgggtttggtggttgcatatgggatggatcccccggggggg-caatcttggatga 380

                                                                       
Query: 182 cctttc----agtctctgctgaactctttgtccctgtatttcctttagacagaataaatt 237
           ||||||    |||||||||| || |||||||||||||||||||||||||| ||| |||||
Sbjct: 381 cctttctttcagtctctgctaaagtctttgtccctgtatttcctttagactgaacaaatt 440

                                                                       
Query: 238 ctgggttaatatttttgagatgggtaagtggccccaaccttttttcaggggccaggccta 297
           ||||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 441 ctgggttaatattattgagatgggtaagtggccccaacctttaaccaggggccaggccta 500

                                                                       
Query: 298 tcctcagaacattggccctacagatggtttagtgtgaaagcttccctaggttccccagaa 357
            | ||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||
Sbjct: 501 acatcagaacattggccctacagatggttttgtgt---agcttccctaggttccccagaa 557

                                                                       
Query: 358 gttagggttgttagggaaaggatcagccagca-aggagatagaaaaggaaattgtggctg 416
           ||||||||||||||||||| |||||||||||| || || |||||||||||||||||||||
Sbjct: 558 gttagggttgttagggaaaagatcagccagcacagtaggtagaaaaggaaattgtggctg 617

                                                           
Query: 417 ggtggtgagcacgatgcgatatcccatacatttaatcccatcactctg 464
           ||||||||||| |||| |||| |||||||||||||| |||||||||||
Sbjct: 618 ggtggtgagcatgatgtgatagcccatacatttaattccatcactctg 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space:   388170
Effective search space used:   388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |