Query= MSMg01no356_f14.b1 MSMg01no356_f14.b1 CHROMAT_FILE:
MSMg01no356_f14.b1 PHD_FILE: MSMg01no356_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:03 2005
(211 letters)
>mm_chr4_131169912_131170522
Length = 611
Score = 284 bits (147), Expect = 2e-81
Identities = 203/247 (82%), Gaps = 41/247 (16%)
Strand = Plus / Minus
Query: 5 gaattctatagttg-ttcccatgtctgccctagtttacacatgcactaataatgaataag 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaattctatagttgctt-ccatgtctgccctagtttacacatgcactaataatgaataag 246
Query: 64 gattcctccgtatatgtctatgttgtatatgtatttatgtgcacatgtatatgtgtatat 123
|||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 245 gattcctctgtatatgtctatgttgtatatgtatatatgtgcacatatatatgtgtatat 186
Query: 124 gtgtattatacatgtg---------------------------------------aatat 144
|||||||||||||||| |||||
Sbjct: 185 gtgtattatacatgtgcatatatatgtatatgtgtatatgtgtattatacatgtgaatat 126
Query: 145 gtatataagtgtatatgtatagatatgtatgtgtgtatatgtaatatgcatgtgtatata 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtatataagtgtatatgtatagatatgtatgtgtgtatatgtaatatgcatgtgtatata 66
Query: 205 tgtatat 211
|||||||
Sbjct: 65 tgtatat 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space: 121604
Effective search space used: 121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no356_f14.g1 MSMg01no356_f14.g1 CHROMAT_FILE:
MSMg01no356_f14.g1 PHD_FILE: MSMg01no356_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:03 2005
(425 letters)
>mm_chr4_130978204_130979021
Length = 818
Score = 737 bits (381), Expect = 0.0
Identities = 411/425 (96%), Gaps = 7/425 (1%)
Strand = Plus / Plus
Query: 1 attatcagcaagctagaagctttcccgctcagctgcaaagccagcatgtacgaagcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatcagcaagctagaagctttcccgctcagctgcaaagccagcatgtacgaagcagcc 260
Query: 61 atagctaaccacactcttgatttgaaaataaagccaggacaccaagatagatgtctgctt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagctaaccacactcttgatatgaaaataaagccaggacaccaagatagatgtctgctt 320
Query: 121 ttgcagtggctgttcatatgcaccccagaggttccaactgaaacacagaggcaagaaaaa 180
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 321 ttgcagtggctgttcatatgcactccagaggttccaactgaaacatggaggcaagaaaaa 380
Query: 181 acacaggcaaccccatcagaaagggggaaacaatgcacatcgatgtcaaggttgcctgtg 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacaggcaaccccatcagaaagggggaaacaatgcacatcgatgtcaaggttgcctgtg 440
Query: 241 tggaaaacctaatagactctacagaaagagcaactggctttgaggtagaagatcaatacc 300
||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tggaaaacccaatagactctacagaaagagc-------tttgaggtagaagatcaatact 493
Query: 301 gaatagccagcaatacaaactggaaatgaagatttaaaatacatggatactagcataaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaatagccagcaatacaaactggaaatgaagatttaaaatacatggatactagcataaca 553
Query: 361 tttacatatgcaaggataaacttgacacaggatgtgctaagcctggactctaaatgctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tttacatatgcaaggataaacttgacacaggatgtgctaagcctggactctaaatgctat 613
Query: 421 ggagt 425
|||||
Sbjct: 614 ggagt 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 818
Length adjustment: 9
Effective length of query: 416
Effective length of database: 809
Effective search space: 336544
Effective search space used: 336544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
