Query= MSMg01no356_n22.b1 MSMg01no356_n22.b1 CHROMAT_FILE:
MSMg01no356_n22.b1 PHD_FILE: MSMg01no356_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:43 2005
(503 letters)
>mm_chr4_45983361_45984263
Length = 903
Score = 920 bits (476), Expect = 0.0
Identities = 488/492 (99%)
Strand = Plus / Minus
Query: 12 attgagactcctctgtgtcgttgcatacactagtactttataaccttggctccctgagtt 71
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 attgagactcttctgtgtcgttgcatacactagtactttataaccttggctccctgagtt 844
Query: 72 tccactccctggtattgacccaagagaaaggaaagggcttattcatcacagacccgtaca 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tccactccctggtattgacccaagagaaaggaaagggcttattcatcacagacccgtaca 784
Query: 132 aggatgtttaaatcagccttgcttgcaatacttaaagacacagagatagcataaacatcc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aggatgtttaaatcagccttgcttgcaatacttaaagacacagagatagcataaacatcc 724
Query: 192 ttcagtgggtgagcagacaattaactgttacagactcaatacctgctgacaaatagcaac 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttcagtgggtgagcagacaattaactgttacagactcaatacctgctgacaaatagcaac 664
Query: 252 agtgtatagggtctataaaccttgtgcttaaggaactttgcatttattgggaagctgcag 311
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 663 agtgtatagggcctataaaccttgtgcttaaggaactttgcattcattgggaagctgcag 604
Query: 312 taggtgatgaatagactggaaggagatcgtgaaaagccggatatcctgtgctcagtaggt 371
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 taggcgatgaatagactggaaggagatcgtgaaaagccggatatcctgtgctcagtaggt 544
Query: 372 tctgtcttaaggctttgaccaggggtgttctttgaacactgttctctttcataatctcac 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tctgtcttaaggctttgaccaggggtgttctttgaacactgttctctttcataatctcac 484
Query: 432 atctggtccctgcctaaagctgccgaagtgtctctgaaacagaattctctacattgcctt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atctggtccctgcctaaagctgccgaagtgtctctgaaacagaattctctacattgcctt 424
Query: 492 gattctatttca 503
||||||||||||
Sbjct: 423 gattctatttca 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_n22.g1 MSMg01no356_n22.g1 CHROMAT_FILE:
MSMg01no356_n22.g1 PHD_FILE: MSMg01no356_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:43 2005
(252 letters)
>mm_chr4_45816680_45817331
Length = 652
Score = 397 bits (205), Expect = e-115
Identities = 234/251 (93%), Gaps = 12/251 (4%)
Strand = Plus / Plus
Query: 1 ctgagattggccatcttggaggcccagccctgtcctgcagctccgtgacatctagccagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctgagattggccatcttggaggcccagccctgtcctgcagctccgtgacatctagccagt 272
Query: 61 ggagtagccagtggagggcaaaatctgatttcagcctgagttcccagtgaagtgttacaa 120
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggag------------ggcaaaatctgatttcagcctgagttcccagtgaagtgttacaa 320
Query: 121 gaagtgtcaaccaataaagtagtccagccagagcttttctacttaaagcagagatggtgg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gaagtgtcaaccaataaagtagtccagccagagcttttctacttaaagcagagacggtgg 380
Query: 181 ctggttccagagtgcagcccatctcatccctcggtcccgcctctctgatgagttatagcc 240
|||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ctgggcccagagtgcagcccatttcatccctcggtcccacctctctgatgagttatagcc 440
Query: 241 aagaagcctta 251
|||||||||||
Sbjct: 441 aagaagcctta 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
