Query= MSMg01no356_o16.b1 MSMg01no356_o16.b1 CHROMAT_FILE:
MSMg01no356_o16.b1 PHD_FILE: MSMg01no356_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:46 2005
(543 letters)
>mm_chr4_79413974_79414917
Length = 944
Score = 953 bits (493), Expect = 0.0
Identities = 526/537 (97%), Gaps = 1/537 (0%)
Strand = Plus / Minus
Query: 5 gaatt-caataaatatctgtaacttttactgtagggcaagttttctaagagaattgttat 63
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattccaataaataactgtaacttttactgtagggcaagttttctaagagaattgttat 682
Query: 64 atgattctagatgtagatttatttgaaattgttctgcacctgcagtgtaacaggttcttg 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 681 atgattctagatgtagatttatttgaaattgttctgcacctgcagtataacaggtgcttg 622
Query: 124 tacactactgtgttatctatagctcagaagcaaaatgaaacgatatgaacaaatttggtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacactactgtgttatctatagctcagaagcaaaatgaaacgatatgaacaaatttggtt 562
Query: 184 ctgaagatcacagatatgagaatctgttcttcttttcatagtacatttgcccaaggacat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaagatcacagatatgagaatctgttcttcttttcatagtacatttgcccaaggacat 502
Query: 244 acaagacaatcttaggcatctctcatttcagcatcccgttttctctcctgagaagccttg 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagacaatcttgggcatctctcatttcagcatcccgttttctctcctgagaagccttg 442
Query: 304 ttgttctttggtttgtagcagtagtctttcttgtatgtcatcaaatgattcttcaggcta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttctttggtttgtagcagtagtctttcttgtatgtcatcaaatgattcttcaggcta 382
Query: 364 catggcaacaaacatgtactggccatgtctgctcttgcttttgagcatcatatagtgctc 423
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 381 catggcaagaaacatgtactggccatgtctgctcttgcttttgaacatcacatagtgctc 322
Query: 424 agagatatgtgatttggtttgagcaagtgtcataaaaatctgtttgatgctacatttatg 483
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 321 agagatatgtgatttggtttgagcaagtgccataaaaatctgtttgatgctacatttctg 262
Query: 484 taaggatattaagttttatttcctatattgtcaaatgcccaatattgcattcctgaa 540
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 taaggatattaagttttatttcctatattggcaaatgcccaatattgcattcctgaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space: 497822
Effective search space used: 497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_o16.g1 MSMg01no356_o16.g1 CHROMAT_FILE:
MSMg01no356_o16.g1 PHD_FILE: MSMg01no356_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:47 2005
(337 letters)
>mm_chr4_79293578_79294314
Length = 737
Score = 557 bits (288), Expect = e-163
Identities = 320/336 (95%), Gaps = 10/336 (2%)
Strand = Plus / Plus
Query: 1 atttttcttatttttaactagatcatgttttttaagtattaaaactacctaacatattaa 60
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 211 atttttcttatttttaactagatcatgttttt-aggtattaaaactacctaacatattaa 269
Query: 61 aaaactttttttcacatttcccaaatttcccaactgaagtatattttatttgtgtataat 120
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 270 gaaactttttttcacatttcccaa---------ctgaagtatattttatttgtgtataat 320
Query: 121 tatgaaataatagttataacccatttttattcatgtcagaactatgctctattaatcgtg 180
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 321 tatgaaataatagttataacccatttttattcatatcggaactatgctctattaatcgtg 380
Query: 181 agtgcttgttctcttattcactgaacttttaaagttctttaaaacttctgtttagaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgcttgttctcttattcactgaacttttaaagttctttaaaacttctgtttagaatat 440
Query: 241 gcttgccagattatctaaattttggatgcaatgaattgcaaatatggatgtgtcatgttg 300
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttgccagagtaactaaattttggatgcaatgaattgcaaatatggatgtgtcatgttg 500
Query: 301 aaagtttcatgcactgaagattttcacatgctgtag 336
||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagtttcatgcactgaagattttcacatgctgtag 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
