Query= MSMg01no356_p05.b1 MSMg01no356_p05.b1 CHROMAT_FILE:
MSMg01no356_p05.b1 PHD_FILE: MSMg01no356_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:49 2005
(368 letters)
>mm_chr4_82523339_82524106
Length = 768
Score = 665 bits (344), Expect = 0.0
Identities = 359/364 (98%)
Strand = Plus / Plus
Query: 5 gaattcagttaattctccaaacaaaagtataattatgatcggagatgaagcatgacgtaa 64
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagctaatactgcaaacaaaagtataattatgatcggagatgaagcatgacgtaa 264
Query: 65 ggaaatgcagcagcgtgaagtcgtggaagcggtgagcccaagcttgactggggttaggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaaatgcagcagcgtgaagtcgtggaagcggtgagcccaagcttgactggggttaggga 324
Query: 125 aggttccctgggaaggcagttcttgaggcttggggttgagaatttggagggatcagccca 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 aggttccctgggaaggcagttcttgaggcttggggttgagaatttggaaggatcagccca 384
Query: 185 gtacgctttataaaagaatgaatgggaagcaacagcgtgtatttacttattcctgtcctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtacgctttataaaagaatgaatgggaagcaacagcgtgtatttacttattcctgtcctg 444
Query: 245 aagaatttaaagggctgggactatgtccagatgaacctgtgtcaattcataatctttatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagaatttaaagggctgggactatgtccagatgaacctgtgtcaattcataatctttatg 504
Query: 305 ctgggttcatgtgggtgagcctattgttgcgtgcatatctgtataccatttgtcttcagt 364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 505 ctgggttcatgtgggtgagcctattgttgtgtgcatatctgtataccatttgtcttcagt 564
Query: 365 acct 368
||||
Sbjct: 565 acct 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space: 272481
Effective search space used: 272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_p05.g1 MSMg01no356_p05.g1 CHROMAT_FILE:
MSMg01no356_p05.g1 PHD_FILE: MSMg01no356_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:49 2005
(498 letters)
>mm_chr4_82693356_82694253
Length = 898
Score = 795 bits (411), Expect = 0.0
Identities = 470/497 (94%), Gaps = 12/497 (2%)
Strand = Plus / Minus
Query: 1 tttgagagagggatcatacaggtgtgaagaaggctggaaagaagcaaaactgtggcacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tttgagagagggatcatacaggtgtgaagaaggctggaaagaagcaaaactgtggcacat 716
Query: 61 tgcataacacagtggaaaagaaaagtgaatacatgatgtcagtttcttcagatccccccg 120
|||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 715 tgcataacacagtggaaa------------acatgatgtcagtttcttcagatcccccca 668
Query: 121 gaagggaagagcagacattagcccaccactgcgctgggtactgtctctgtctgacagcct 180
||| ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 667 gaaaggaagagcagacactagtccaccactgcactgggtactgtctctgtctgacagcct 608
Query: 181 ggttctttcttgattcttctcatggtttgagttgcccaaaacaggtccatgaacgaataa 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 607 ggttctttcttgattcttctcatggtttgagttgcccgaaacaggtccatgaacgaataa 548
Query: 241 gactgaaagatattgatattgaagattaaaggtagtgggaccttcacaaagacatcgttg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 547 gactgaaagatattgatattgaagattaaaggtagtgggaccttcacaaagacatcattg 488
Query: 301 tgactcttttggactccagaattcgagaagcgtattactagcccccgaaaaatgtataag 360
||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 487 tgactcttttggattccagaattcgagaagcgtattactagtttctgaaaaatgtataag 428
Query: 361 gggatgaataattttgttactttgcattttgttttgttgtagcaactgcttccatatcag 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 427 gggatgaataattttgttactttgcattttgctttgttgtagcaactgcttccatatcag 368
Query: 421 ggatacgagattgattgagaatttgaaactctggggttacagcttcttaagtctgaactc 480
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 367 ggatacgagattgattgagaatttgaaactctggatttacagcttcttaagtctgaactc 308
Query: 481 tgagtaaatggaaagac 497
|||||||||||||||||
Sbjct: 307 tgagtaaatggaaagac 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
