BAC Information

Click to search

BAC

Clone NameMSMg01-357C04
Chromosome4 (Build37)
Map Location 144,607,126 - 144,607,619
singlet/doubletsinglet
Overlap geneVps13d
Upstream geneLOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3
Downstream geneTnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357C04.T7 (MSMg01no357_c04.b1)MSMg01-357C04.TJ (MSMg01no357_c04.g1)
ACCAG467110AG467111
length747754
length of high quality
(start - end)		553 (45 - 597)456 (74 - 529)
definitionCHROMAT_FILE: MSMg01no357_c04.b1 PHD_FILE: MSMg01no357_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:03 2005CHROMAT_FILE: MSMg01no357_c04.g1 PHD_FILE: MSMg01no357_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCATTGTTTACCCTAATGGTTTCAGCAAAGCATGCAGTATTACAC
AAACCATGTCAAACATGTGGTGGTTCTCAACTTTACATTTCAGAGGCACT
TAAACCTTTCCCAAGGACCCTGTTTCCTAGTCTCCTGTTGCTTTATCCCC
TTCTCTGCATCCTCTCTTTATTGCCTGTATGCTGCTTAAGACTTGGAATA
GAATAAAAAAAAAAAAGGACCACCATTAGCTTCTCACCTTTGCTTTCATT
AAAAACATTGACTAATGAACTGATGACTTTTCTGTAATTTTTTTTTTCAG
TTTGAGGCAGGGTCTCACTTATTCCAGGCTGTCTTTGAATTTATGTAGCT
GAATTCAAGATGGCCTTGAATTTCTGGTTTCTGTTCTCCACCTCCCTAGT
ACTAGGATTACAAGTGTATGCTACTGTTTCTGGTTTTATGTAGCAATGGG
GACTGAACCAGGGCTTTGTGCACTAGGCAGGCCCTCTACCTACGACACTC
TTAATATAGCCCAGGGGTTTTGTTTTGGTTTTGATTTTCTTTTTTTAAAA
TTATCCTAGACATGTGTTCCTTCTAACTCACAGACTATTACAGTGTTCTC
TGATTCTGGACTTTCTAAACAAGTCCCTTGGGTCTCTTGACTTGGGCCCG
TTTTATAGAATTACAACTGCCTTTATCATTCCAGATGATAAAACCAA

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACGAGAGT
ACCAGTGAGTACAGCTTTACGAGGTAAGTCTGGTCTTGAACTTTCTAAGG
AAATTCAAGACAGTCTATCAGAAGTAAAGTGGAATATGTTTGGCCTTGAA
TTTTTTCTGGTGTTAGGAGCCCTTTTGTTCCTTTTCACATGTTATCAAGT
GATTAAGATAGGGCTGAAAATTCTAGAGGAAATTCAGGACAAGCTATCAG
AAGTAAAGTGGGGAGAGAGAGTAGGAACAAAGAGGAAATATGGTACACAA
AATAAGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAG
GTTAGGTAGGAATACCTGGAGAGAGATTAGAAGAAAAAGAGGAAAAAGGG
AAAAGAAGAAAGATCAATTAGCGGAGGTCTCTAGGAAAAGGAGCCTGTGC
TCATCGCTGGATGGGCTCGGGGAGCCAGGTCTTGGCAGCTCTGAGTCAGA
GGATGAATTCTCCTGTGAGGAAACGGAGTGGGAGGAAGAGTCAGTTCATT
ATGACGAAAAGAGGTATGACCCAGCGTAAGTGCTAGCTACGCAGTGAAGG
AAGCGAAAAGTGNTTGCGGGAAGCCAATTGTCCGCGTTGAGCTCTAGTTT
ACCTCGCGTTACGTCCGGCCGAATCTCGATTTCGGCCTTTTTTACGATGT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_c04.b1 MSMg01no357_c04.b1 CHROMAT_FILE:
MSMg01no357_c04.b1 PHD_FILE: MSMg01no357_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:03 2005
         (553 letters)



>mm_chr4_144607126_144608078
          Length = 953

 Score =  955 bits (494), Expect = 0.0
 Identities = 494/494 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcattgtttaccctaatggtttcagcaaagcatgcagtattacacaaaccatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaattcttcattgtttaccctaatggtttcagcaaagcatgcagtattacacaaaccatg 435

                                                                       
Query: 65  tcaaacatgtggtggttctcaactttacatttcagaggcacttaaacctttcccaaggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcaaacatgtggtggttctcaactttacatttcagaggcacttaaacctttcccaaggac 375

                                                                       
Query: 125 cctgtttcctagtctcctgttgctttatccccttctctgcatcctctctttattgcctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cctgtttcctagtctcctgttgctttatccccttctctgcatcctctctttattgcctgt 315

                                                                       
Query: 185 atgctgcttaagacttggaatagaataaaaaaaaaaaaggaccaccattagcttctcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atgctgcttaagacttggaatagaataaaaaaaaaaaaggaccaccattagcttctcacc 255

                                                                       
Query: 245 tttgctttcattaaaaacattgactaatgaactgatgacttttctgtaattttttttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttgctttcattaaaaacattgactaatgaactgatgacttttctgtaattttttttttc 195

                                                                       
Query: 305 agtttgaggcagggtctcacttattccaggctgtctttgaatttatgtagctgaattcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agtttgaggcagggtctcacttattccaggctgtctttgaatttatgtagctgaattcaa 135

                                                                       
Query: 365 gatggccttgaatttctggtttctgttctccacctccctagtactaggattacaagtgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gatggccttgaatttctggtttctgttctccacctccctagtactaggattacaagtgta 75

                                                                       
Query: 425 tgctactgtttctggttttatgtagcaatggggactgaaccagggctttgtgcactaggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  tgctactgtttctggttttatgtagcaatggggactgaaccagggctttgtgcactaggc 15

                         
Query: 485 aggccctctaccta 498
           ||||||||||||||
Sbjct: 14  aggccctctaccta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |