Query= MSMg01no357_d03.b1 MSMg01no357_d03.b1 CHROMAT_FILE:
MSMg01no357_d03.b1 PHD_FILE: MSMg01no357_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:07 2005
(602 letters)
>mm_chr4_24791814_24792815
Length = 1002
Score = 1114 bits (576), Expect = 0.0
Identities = 591/598 (98%), Gaps = 4/598 (0%)
Strand = Plus / Plus
Query: 5 gaattctagcaaagccttttccactaacatatgcccttctatgttaaagtcagcagattt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagcaaagccttttccactaacatatgcccttctatgttaaagtcagcagattt 264
Query: 65 gcaatcttagatccgtttttaacataacttctcctttgtcatagagggtaattgtcttgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaatcttagatccgtttttaacataacttctcctttgtcatagagggtaattgtcttgt 324
Query: 125 tgattttttgtcaacttgacacaagctagtgttatcagagaagtgagaaccacaactgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgattttttgtcaacttgacacaagctagtgttatcagagaagtgagaaccacaactgag 384
Query: 185 aaattacctctattgcatcagcctgtgtgcaagactgtgaggcttgattgatgagggagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaattacctctattgcatcagcctgtgtgcaagactgtgaggcttgattgatgagggagg 444
Query: 245 ttccagctctttctgggcagtgtcacctctggtctgatagcccttaagtgtgtaagtaag 304
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttccagctctttctggacagtgccacctctggtctgatagcccttaagtgtgtaagtaag 504
Query: 305 cagactgagaaagccatggggagcaagccagtaaaccgtgttcctccatggcctctacat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagactgagaaagccatggggagcaagccagtaaaccgtgttcctccatggcctctacat 564
Query: 365 tagctcctgactccaggttcctgcctggagttcctaccctgacttcttctatagatgatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagctcctgactccaggttcctgcctggagttcctaccctgacttcttctatagatgatg 624
Query: 425 gactgtggtgaaagtataagccgaaaacaaaccaaaataaacaaacaccctctgcaattt 484
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 625 gactgtggtgaaagtataagcccaaaacaaaccaaaataaaca----ccctctgcaattt 680
Query: 485 gctttttgtcatggtgtttcatcagagcaatggaaatgctaactaagatagtaatgtatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctttttgtcatggtgtttcatcagagcaatggaaatgctaactaagatagtaatgtatt 740
Query: 545 cacaaagcaaaggattgggataaaacacaggtgcctgcctacaacacctttctcatta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacaaagcaaaggattgggataaaacacaggtgcctgcctacaacacctttctcatta 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_d03.g1 MSMg01no357_d03.g1 CHROMAT_FILE:
MSMg01no357_d03.g1 PHD_FILE: MSMg01no357_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:07 2005
(495 letters)
>mm_chr4_24957866_24958760
Length = 895
Score = 847 bits (438), Expect = 0.0
Identities = 473/486 (97%), Gaps = 5/486 (1%)
Strand = Plus / Minus
Query: 11 cttgctctttgtggcttcctcagcctgctttcttca-atacagctcgggggtagcaccac 69
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 895 cttgctctttgtggcttcctcagcctgctttctt-atatacagctcgggggtagcaccac 837
Query: 70 ccgcagtgggctggggcctcctacattaatcattaatccaggaaatgtcccacaggcttg 129
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 836 ccgcagtgggctggggcctcctacattaatcattaatcgacgaaatgtcccacaggcttg 777
Query: 130 ctgagaggccaaactgcggaggcattttctcaattgcagtgccctcttcacaaatgatta 189
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 776 ctgagaggccaaactgcggaggcattttcttaattgcagtgccctcttcacaaatgatta 717
Query: 190 ttgctgtgacaagttggaagaaaaaaaaaaaaaggcaaactaatcaggacaacacacaaa 249
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 716 ttgctgtgacaagttggaag---aaaaaaaaaaggcaaactaattaggacaacacacaaa 660
Query: 250 ttgaaatgggaaataagtgcaaaatggaggattgcattaatgtgggagctgggtacgtgt 309
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 659 ttgaaatgggaaataagtgcaaaatggaggcttgcattaatgtgggagctgggtacgtgt 600
Query: 310 gaaagttaaggatgatgactgatttcttttttaatgtaatccaaatgaagatctagtacg 369
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aaaagttaaggatgatgactgatttcttttttaatgtaatccaaatgaagatctagtacg 540
Query: 370 ccatagtgttctgtgctacagttgtgcatatatacagaggtgggcattatttatcaacat 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 539 ccatagtgttctgtgctacagttgtgcatatatacagaggtgggcattatttatcagcat 480
Query: 430 atttgtgagagttaaggctaaagactggaatgaaatgctaaaccatgaagggaagaggtt 489
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 479 atttgtgagagttaaggctaaagactggaatgaaatgctaaactatgaagggaagaggtt 420
Query: 490 tctcat 495
||||||
Sbjct: 419 tctcat 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
