BAC Information

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BAC

Clone NameMSMg01-357E23
Chromosome4 (Build37)
Map Location 117,435,358 - 117,435,726
singlet/doubletsinglet
Overlap geneKlf17
Upstream geneTesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749
Downstream genePpia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357E23.T7 (MSMg01no357_e23.b1)MSMg01-357E23.TJ (MSMg01no357_e23.g1)
ACCAG467243AG467244
length1,181768
length of high quality
(start - end)		---410 (71 - 480)
definitionCHROMAT_FILE: MSMg01no357_e23.b1 PHD_FILE: MSMg01no357_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:16 2005CHROMAT_FILE: MSMg01no357_e23.g1 PHD_FILE: MSMg01no357_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATGCACGCCGCGTCACTCGCGTTTAATCATATTGTCTCTCGTCCTTTTC
CCTCTATGGTCGCCGCGGCGTTATCCTCCTTACCCCCCCGGCCCTCTCCT
CATCGGGCCGGTGACCTTATGTAATCGACACGGTAGGTGCATGCACATTC
CCCGGTGCTTGGACGCCCCGGCAAGAGGAGGANAAAGAGAATTTTTTCTC
CTGTTAAATAAAAAAAATTATTTGTGGGCGGGAGGGCGCCGGGCGCCTAA
AATATTAAACCGGGAAAACCCTTTTCCACAACCCTTTAAAATTATTTGCT
CCCTCGCCCANAGAGNAAAAGAGAGGGGGGNNTAAAATTTTTTTCCCCCG
CTCCCCGCGGCGTGCGAGTTGCGTCGCGGGGGGGGGGCGGANAAGTTCTT
TCTTTCTTTCTATCTAAAAAAANAAGAAAAGAAAAGAAGAGCGGTTGTTT
TTGTTTGTTTGCTTTTTTNNATTANTAANCTCTCGCCGCGNTGCTTGACC
TCCCGAGAATATCCGCCCATNGCTGACACAGCCGTTGTGTAGANATTTAT
TTGTTACATGTTTGTAANCGACTTGTTCTGGAATCACTCCGCTCCGACCT
ACACTCCGCTCTAGGCCTCCGCGCGCGCTGGTCAATTCAGGAGTTTGTGG
TGTGTTTTTTTTTTCAGCGACTTTTTGCAATATTTATGAATTGTTTTTTT
TANCGACCTTTGAGTTTCTCTCCCCAATATTACTGAAGCGCATAANCCGC
ACCATTTCTTAGTCACGGATATCCTCTCCCCTCTCCTCTCACGTGTCTAA
GAATTTAGCCGCCGTATAGTTACGTCCTCGTCGCTCAACTGATATCCCCT
AACCGCCTCGAANNCTCTCTTGACCTTTTTATATATATGGGTCTCAGACT
AGTGGTCGGGTGAGCGGCGTTGGTGTCACNCTCAGTCGCCATGTGCGGGC
GATAGCTATCTCCATTATTTCGTTGATCATTATTTTANTCTAGATGACAA
CATAAACCTACAATCAATGTGATGTATCACTCNCCTTGAGAAGTAGCCGC
ACGTNTCTCATACACGCTCGCGCAGGGACGCGTGTCGCCCATTTTTCAGG
AGTGGTGGCCGCATACGCGCCCGCGGCTCATTGACGCGGGCGAGGCNNCN
TGTGGCGATAGAGAAGACTCTCTAGGCTTCN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTCCTTTGTAGACCAGGCTGGCCTCACA
ACTATCTGCCTGCCTCTGTCTCTTGAACAATGAGATTAAGGGTGTGCACA
ACCATGCCCAGCAAGTAATACACTTTTGATTGTGCTTCTTCACTTCAGCC
TCTAGAGACCCATAGGCAGGAGGCAGAGGCAGGTGGATATCTGAGTTCAA
GGCCAGCGTGGTAGAGATTCAGAACAGCCAGGGCTACACAGAGGAACCTT
ATCTTGAAAAACAATGTTTGCAGGGCAGGTAAAGAGCAATGACTTTGCCA
CTTTGTTAATCTGGGGGTGAATTTCTGTCTTTATAGCTGGCTTTGCTATG
GGACTTTAGATGGGATTTTTGCTTTGTTCTTTGAGACAGGCTCCCACCTT
GCAACTCTGTTTATACCATGGAGCCCAGGTTAAGAGTAAACTGACTTCAG
GCACGTACTGCTTCACCTTGAACAAATATAGGGGTTTTCCTCCTGGTGGG
CCCTTTTAACCCAGGGTTCCCTTGGGGGATGCCCAAAATTTCCTAAAAAT
CCTTTGTAAAACAAACTGGGGTATTAAACAAAATCTAAATCGGAAATGGT
CTTCCCTAACTATGAACCCCCCAACCCCTTTTTTAATTCTTTAATAAAAA
CGGTTTCACATGGCACCCCTTTTACTTTTTTGGTCCGCACTGTCCTACGG
CTCTTTTTTATCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_e23.g1 MSMg01no357_e23.g1 CHROMAT_FILE:
MSMg01no357_e23.g1 PHD_FILE: MSMg01no357_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:16 2005
         (410 letters)



>mm_chr4_117434917_117435726
          Length = 810

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 42  gcctctgtctcttgaacaatgagattaagggtgtgcacaaccatgcccagcaagtaatac 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gcctctgtctcttgaacaatgagattaagggtgtgcacaaccatgcccagcaagtaatac 751

                                                                       
Query: 102 acttttgattgtgcttcttcacttcagcctctagagacccataggcaggaggcagaggca 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 acttttgattgtgcttcttcacttcagcctctagagacccataggcaggaggcagaggca 691

                                                                       
Query: 162 ggtggatatctgagttcaaggccagcgtggtagagattcagaacagccagggctacacag 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ggtggatatctgagttcaaggccagcgtggtagagattcagaacagccagggctacacag 631

                                                                       
Query: 222 aggaaccttatcttgaaaaacaatgtttgcagggcaggtaaagagcaatgactttgccac 281
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aggaaccttgtcttgaaaaacaatgtttgcagggcaggtaaagagcaatgactttgccac 571

                                                                       
Query: 282 tttgttaatctgggggtgaatttctgtctttatagctggctttgctatgggactttagat 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tttgttaatctgggggtgaatttctgtctttatagctggctttgctatgggactttagat 511

                                                                       
Query: 342 gggatttttgctttgttctttgagacaggctcccaccttgcaactctgtttataccatgg 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gggatttttgctttgttctttgagacaggctcccaccttgcaactctgtttataccatgg 451

                    
Query: 402 agcccaggt 410
           |||||||||
Sbjct: 450 agcccaggt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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