NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGGAGTCACCTTCTTAAGTTCTTTATATATATTGGATATAANNCCT
ATCATGGAAANAAATTCCGCTGTGTTNNTTCNNAGTGTATTACTATGATT
GCNCTNNTTGNNNNNNNNNNNNTNNNTTTGTTGGCTGGCGGCTNNNNNNN
NNNNNNNNNNNNNNNGNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNGNNN
NNNGNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGGNGGGGGGGAGGAGGT

TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGTCTGTTTGAAGTAACA
CCCAGCACCACCAGCATATTGTAGTTCTGCTAGGGCCTGAGTGTAGCTAT
TCATTGATTTGTTTACTTATGTCTCCCTAGTGAGACTGTTTTAGCCACTC
ACACCTAGCACAAGGTCTAACGCATGGGGAAAAAATGCATAAAATGCTTG
AAGATGAAAGAGGGGGGAGGGGAGAGAAGGCAAAGGAGAGAAAGAAAGGA
AAATGATTTTCCTAACACTGGAAGGGGGGAAGATATTCTGGAGCTTGTGT
GTCCAGCAAGTTTCAATTTATATCCACTGTCACAAGTAATTAGGATCTTT
CCCAGTTCTTTCACAGCAATGCCTGCGAAGTCTTTGCAAGTATTAATCCA
GTGTTAGGCTGGTGCTGCGTGTCCTGCTATGCCATATGAATCCCTTCCCT
TATGATCTGAGGACAGTAAAATATTGTACAAATATTATTATGCCAAATGA
ATATGTGTAAAAATTATCCTCAGGGCTTCTCCGGAGGATAGAGTATCTCA
CCAGCAAAATAAACACACTTCCTCAGCCCCAGGGAACAACACTCCTCCCT
TCTCCTGACTCCAAAAGCACATTATTCATTCCTCTCATCGAGCACTCCTG
AGAGGCAGTTGAGAACTGAGTGTCCTCCTTT

Query= MSMg01no357_j02.g1 MSMg01no357_j02.g1 CHROMAT_FILE:
MSMg01no357_j02.g1 PHD_FILE: MSMg01no357_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:36 2005
         (491 letters)



>mm_chr4_96896790_96897681
          Length = 892

 Score =  880 bits (455), Expect = 0.0
 Identities = 483/493 (97%), Gaps = 3/493 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaggtctgtttgaagtaacacccagcaccaccagcatattgtagttctgctagggcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggtctgtttgaagtaacacccagcaccaccagcatattgtagttctgctagggcctg 260

                                                                       
Query: 61  agtgtagctattcattgatttgtttacttatgtctccctagtgagactgttttagccact 120
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 261 agtgtagctattcattgatttgtttacttatgtctccctggtgaaactgttttagccact 320

                                                                       
Query: 121 cacacctagcacaaggtctaacgcatggggaaaaaa--tgcataaaatgcttgaagatga 178
           ||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||
Sbjct: 321 cacacctagcacaaggtctaacgcatggggaaaaaaaatgcataaaattcttgaagatga 380

                                                                       
Query: 179 aagaggggggaggggagagaaggcaaaggagagaaagaaaggaaaatgattttcctaaca 238
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gagaggggggaggggagagaaggcaa-ggagagaaagaaaggaaaatgattttcctaaca 439

                                                                       
Query: 239 ctggaaggggggaagatattctggagcttgtgtgtccagcaagtttcaatttatatccac 298
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 440 ctggaaggggggaagatattctggaacttgtgtgtccagcaagtttcaatttacatccac 499

                                                                       
Query: 299 tgtcacaagtaattaggatctttcccagttctttcacagcaatgcctgcgaagtctttgc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtcacaagtaattaggatctttcccagttctttcacagcaatgcctgcgaagtctttgc 559

                                                                       
Query: 359 aagtattaatccagtgttaggctggtgctgcgtgtcctgctatgccatatgaatcccttc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagtattaatccagtgttaggctggtgctgcgtgtcctgctatgccatatgaatcccttc 619

                                                                       
Query: 419 ccttatgatctgaggacagtaaaatattgtacaaatattattatgccaaatgaatatgtg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 620 ccttatgatctgaggacagtaaaatattgtacaaatattattatgccaaatgagtatgtg 679

                        
Query: 479 taaaaattatcct 491
           |||||||||||||
Sbjct: 680 taaaaattatcct 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space:   424242
Effective search space used:   424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)