BAC Information

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BAC

Clone NameMSMg01-357J08
Chromosome4 (Build37)
Map Location 50,317,356 - 50,317,826
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357J08.T7 (MSMg01no357_j08.b1)MSMg01-357J08.TJ (MSMg01no357_j08.g1)
ACCAG467448AG467449
length796766
length of high quality
(start - end)		81 (46 - 126)471 (77 - 547)
definitionCHROMAT_FILE: MSMg01no357_j08.b1 PHD_FILE: MSMg01no357_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:37 2005CHROMAT_FILE: MSMg01no357_j08.g1 PHD_FILE: MSMg01no357_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTTAGCTCTATACTCTGTTGTTTGTTTGTTTGTTTGTTTGT
TTTGTTTTGTTTTTTGTTTTTTTGGCTTTTTTTATCATGACCTGAAATTC
TAACTATTCCATTCCTATGCTTATCCTCGTAAGATACCTCTTTGTGCTTC
TCAAGTGATAGTACACTATATTCATACCTTTACGCTAGTTGTCATACCCA
TAAGCTCGATACGACCCATTATGTCCCATAATGCAGGAAGTCATTCAGAA
TATGTGCGTCATTTATACAAAGGAATACTAATTAACTATTATAAACAAAA
TAATCATAACTGTTGTTCCACAATTGCTATGAACCTGAAGAATATCTTAC
TGCAGGATAGAATATCCTGATGTAGAGATTAATACGTGCCATTACCAAGT
ACTTTGATAAAGACCATCCATTATCTCGATATCTCCTATTACAATACATC
TATTTCCCCTTCTTATGTGACCTCTTTCTCATCCCCTTCTCTATTTAGCT
CTTGCATTTTATCTTCCTATCTATTTCATTTCCTTTTACGTCTCTCTCTT
CTCATACTTTTTTTTCCCTTTTTATATTCCATTACTTTTCCCTTTCTTTT
TTTTTCTCTCCCCCTTTTTCCTTACTCCTTATTTTCCTCATTCCCTCTTT
TCTCCTTTTACCTTTTCCCTCCTTTTTACTTACCATCTTTTCCCTACCTC
TCTCTCACTTCCCGTTCCTTTCCTTTCCATACCCTTTTCTATACTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGGCCAAAAACTACTAAAAG
AATAAGTTTGGAAAATTTACTAATCGCTGGAATCAACAACTGCCCTGAGA
GCATCTGCCAAAGGTCTGAAGCTTTTAGATTTTAATAGGTCCTTTGAGAG
GTAGACTTGGCAATATCCAAAGTTGGCTCAACATGGGGAGTCAGGAAAGG
TTTCCTTCATGAAGCTTTTATTCTGAGAGATAATGAATTTGGTGAAAAGG
TGAGCTAGAAAAAGCAGCCTCTATACAGAATGTCACAACATGGAATCTTC
ACATCACAGCCTTTGCCCTGGAAAGAAATAGAAAAATATCTCCAGTGGAA
TTACTTTATGAAAAACTGACACATAACTTTTTGTTCAGAATTTACAATGT
TTATGAGACCCCTAGACATTTGACATGTCCCATGTTAGTTGTAGTCTAGG
CATTTGATGAAAGCAAATATAAAAGGCTTCTGGGAAAATATTTTAAATAT
AGGTCCCTCANGATCCCTATGAATAAGTTTCTGAAAAAAAAAATCCTGAG
TTGCTTTTCAACTTTCAGTTTGAGGTACAGGGGAAAAATTTGGTTTGGGA
ATTACCTTTAAACCCCCAAGAACCTTAAGGCTGATGAAGGTAAGGCTTTT
TTTTTTTGAAGGAAGAAAGAAGTTTTCCCTTTCTTTAAAAGAAAACTGAT
ACCCCGTTCTCTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_j08.g1 MSMg01no357_j08.g1 CHROMAT_FILE:
MSMg01no357_j08.g1 PHD_FILE: MSMg01no357_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:37 2005
         (471 letters)



>mm_chr4_50317156_50318026
          Length = 871

 Score =  903 bits (467), Expect = 0.0
 Identities = 470/471 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaggccaaaaactactaaaagaataagtttggaaaatttactaatcgctggaatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaggccaaaaactactaaaagaataagtttggaaaatttactaatcgctggaatcaa 260

                                                                       
Query: 61  caactgccctgagagcatctgccaaaggtctgaagcttttagattttaataggtcctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caactgccctgagagcatctgccaaaggtctgaagcttttagattttaataggtcctttg 320

                                                                       
Query: 121 agaggtagacttggcaatatccaaagttggctcaacatggggagtcaggaaaggtttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggtagacttggcaatatccaaagttggctcaacatggggagtcaggaaaggtttcct 380

                                                                       
Query: 181 tcatgaagcttttattctgagagataatgaatttggtgaaaaggtgagctagaaaaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgaagcttttattctgagagataatgaatttggtgaaaaggtgagctagaaaaagca 440

                                                                       
Query: 241 gcctctatacagaatgtcacaacatggaatcttcacatcacagcctttgccctggaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctctatacagaatgtcacaacatggaatcttcacatcacagcctttgccctggaaaga 500

                                                                       
Query: 301 aatagaaaaatatctccagtggaattactttatgaaaaactgacacataactttttgttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatagaaaaatatctccagtggaattactttatgaaaaactgacacataactttttgttc 560

                                                                       
Query: 361 agaatttacaatgtttatgagacccctagacatttgacatgtcccatgttagttgtagtc 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaatttacaatgtctatgagacccctagacatttgacatgtcccatgttagttgtagtc 620

                                                              
Query: 421 taggcatttgatgaaagcaaatataaaaggcttctgggaaaatattttaaa 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggcatttgatgaaagcaaatataaaaggcttctgggaaaatattttaaa 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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