Query= MSMg01no357_j12.b1 MSMg01no357_j12.b1 CHROMAT_FILE:
MSMg01no357_j12.b1 PHD_FILE: MSMg01no357_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:38 2005
(534 letters)
>mm_chr4_34757932_34758865
Length = 934
Score = 1017 bits (526), Expect = 0.0
Identities = 529/530 (99%)
Strand = Plus / Minus
Query: 5 gaattccttggacacagaatagtacggcatgctcaaaaacattacaaagatgggatttac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gaattccttggacacagaatagtacggcatgctcaaaaacattacaaagatgggatttac 675
Query: 65 agctgtcccatatgtgcaaagaattttaattctaaagactcgtttgtccctcatgttacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agctgtcccatatgtgcaaagaattttaattctaaagactcgtttgtccctcatgttacc 615
Query: 125 ctgcatgttaaacagtctagtaaagagagactagcagctatgaagccattaagaagattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctgcatgttaaacagtctagtaaagagagactagcagctatgaagccattaagaagattg 555
Query: 185 ggaaggcctcctaaaatcacagccacccatgaaaatcaaaagactaatactaatactgtg 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 554 ggaaggcctcctaaaatcacagccacccatgaaaatcaaaagactaatattaatactgtg 495
Query: 245 gctaaacaggaacagcgacccataaaaaagaatagtctttattcaacagatttcatagtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gctaaacaggaacagcgacccataaaaaagaatagtctttattcaacagatttcatagtg 435
Query: 305 tttaatgacaacgatggttcagatgatgaaaatgacgacaaggacaagtcttatgagccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tttaatgacaacgatggttcagatgatgaaaatgacgacaaggacaagtcttatgagccc 375
Query: 365 gaggtgatccctgtccagaaaccagtacctgttaatgagtttaattgtcctgtgaccttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaggtgatccctgtccagaaaccagtacctgttaatgagtttaattgtcctgtgaccttt 315
Query: 425 tgtaaaaagggctttaagtacttcaaaaatttaattgctcatgtgaaaggccataaggat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgtaaaaagggctttaagtacttcaaaaatttaattgctcatgtgaaaggccataaggat 255
Query: 485 agtgaagatgccaaacgctttcttgaaatgcaaagcaagaaagtcatttg 534
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agtgaagatgccaaacgctttcttgaaatgcaaagcaagaaagtcatttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_j12.g1 MSMg01no357_j12.g1 CHROMAT_FILE:
MSMg01no357_j12.g1 PHD_FILE: MSMg01no357_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:38 2005
(479 letters)
>mm_chr4_34596207_34597085
Length = 879
Score = 538 bits (278), Expect = e-157
Identities = 371/448 (82%), Gaps = 73/448 (16%)
Strand = Plus / Plus
Query: 1 atctccttttagcatttctcctcatcaatttcctgcaagtgggttaatgaaaaaaaaaaa 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 150 atctccttttagcatttctcctcatcaatttcctgcaa---------tgaaaaaaaaaaa 200
Query: 61 actggaatgtctaagagatacgtgtgtgtacacattacacatataa-------------- 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggaatgtctaagagatacgtgtgtgtacacattacacatataagtgtgtgtgtgtgt 260
Query: 107 ----------------------atatatatacatac------------------------ 120
||||||||||||||
Sbjct: 261 atatatatgtgtatatatatatatatatatacatacatacatacatacatacatacacac 320
Query: 121 --gggcatacaatttcattatggaaactattgctaggcaaagtaaaaaatccaagctttg 178
| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 321 acg--catacaatttcattatggaaactattgctaggcaaagtaaagaatccaagccttg 378
Query: 179 taccaatgtgcaaacatttccgttcagaacaggagtccctgtcaggaaggcatggtggca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taccaatgtgcaaacatttccgttcagaacaggagtccctgtcaggaaggcatggtggca 438
Query: 239 aatgcctttaatttcagcactttggagtcagaagcagccagttcatgagttcaaggactt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatgcctttaatttcagcactttggagtcagaagcagccagttcatgagttcaaggactt 498
Query: 299 cctgacctacacagagctccagttcagtcagtgctgcttagtgagagcatgccacataca 358
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 499 cctgacctacacagagctgcagttcagtcagtgctgcttagtgagagcatgccaaataca 558
Query: 359 cacattagacagacagacagacagacag 386
||||||||||||||||||||||||||||
Sbjct: 559 cacattagacagacagacagacagacag 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
