BAC Information

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BAC

Clone NameMSMg01-357K14
Chromosome4 (Build37)
Map Location 83,476,077 - 83,649,836
singlet/doubletdoublet
Overlap gene4930473A06Rik
Upstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
Downstream geneLOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357K14.T7 (MSMg01no357_k14.b1)MSMg01-357K14.TJ (MSMg01no357_k14.g1)
ACCAG467506AG467507
length763755
length of high quality
(start - end)		397 (42 - 438)431 (74 - 504)
definitionCHROMAT_FILE: MSMg01no357_k14.b1 PHD_FILE: MSMg01no357_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:43 2005CHROMAT_FILE: MSMg01no357_k14.g1 PHD_FILE: MSMg01no357_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,649,444 - 83,649,836)(83,476,077 - 83,476,507)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTCCTCCAATCCCCTAACAAACATTTCCCCAAATTTCATTGGCCAAAG
TCAATCTAACACTACATGCTAGAATCAAACCAAAGCCCCTGCCTCAGAAA
CTGCATACCTGACATACAGGAACATGTGTACTCAACTCCTGCACTGTATA
CTCTGAGGGCGTTCAAGAGCTGCACTGAGGAAGAGAGATGAAGGAGTGAA
GTGAGGTGGTCAAAGGGCAAGGAGGACAGAGAAGATTCCATGAGCCCCGG
TCAGCTCCTGCTTTGGGCACTGTTGCTATGGTGACTACTAAGACCTTGTC
AAATTAGCTGGGAACCTAAGGCTCTAGGAACATTGTGGGAGAGGGGGTGG
AAACTGTTAGAACCAGAGGTTCAGGAAGATTTTTGGGAGATTAGTGATGT
CAGAAACTACATCCATATAACCTCACCGCCATGACTGCCCTCACACATGT
TCTGAACAAACATGACACCAATAGGCTACCATAGTGAATGGCAAAGAATC
CATAACGTTCTCCTCTACCTAGAACTACCGGCAACTAGTGTAATTCTGTC
ATCCCCAACAAATATTCCTCTCTATTCGCACAAATTACTCTCTGGTTTTT
CCCATTACCAAATGACCCGTTTTTTGCTTTTCCACTCCTCCTCCTATCTT
CTCTCACCTATTAAATTACTTATTTCCCATCCTCCTTCTTCCCCTCCGGC
TTCATCCTCTTTC

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGGTTGGGTGTGTTTTAACACATTAA
TTTTTTTCATGAGTTCTTGTCTGGCATGGCATCACCCCTCTTATACAGGA
TGGCATACTGCAAAATCACATGACAGAGAAACACAGGAAATTTGGGTTCT
AGAGAAAGTTTGCCATCTGACTCATCTCAAAGCTTTGGGAAGTAAACCGC
ACAGTCTCCATGGGTCTTGGTTTTCCTGGCTATAGAATGAAGACTCTAAA
TGAAATGAAAGTTGAATTCCTGCACAACTCTAAAATTCTTTTATTTGAGC
TATAAATAACAATTTAGAATTCTGAATTCTATGCTTTATGTTGTTCCTGC
TTCACTTATATTGATGAAATGAATGTTTCTAAATTTGGTTATATTCTGCA
CCAAGGAACCACTCACAAAAGCATACGAGGTATATAAACCTTACAATATA
ACTTATAACTAGGTAGTCAAAAAGTCCCCATAGTATTTGGCGAATGGATT
AGCATACTTGTCAGAAATATTTCCCTTTTTAATGCTCCGTTTTTTCGACA
TTCTATATGCCAAGAATGCGCACTTTCTACTTGCTCCATTATTTGTACGT
CCTTGCAATTTTTATTTACTTGATTACCCTCCTGTGCCTTATGGTTACCC
TCTTCTCTTTTATGCCATCCCTTAATCTTATTCCCCTTGTTTTTCCTTTT
TTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_k14.b1 MSMg01no357_k14.b1 CHROMAT_FILE:
MSMg01no357_k14.b1 PHD_FILE: MSMg01no357_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:43 2005
         (397 letters)



>mm_chr4_83649315_83650111
          Length = 797

 Score =  745 bits (385), Expect = 0.0
 Identities = 391/393 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctcctccaatcccctaacaaacatttccccaaatttcattggccaaagtcaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattctctcctccaatcccctaacaaacatttccccaaatttcattggccaaagtcaat 463

                                                                       
Query: 65  ctaacactacatgctagaatcaaaccaaagcccctgcctcagaaactgcatacctgacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctaacactacatgctagaatcaaaccaaagcccctgcctcagaaactgcatacctgacat 403

                                                                       
Query: 125 acaggaacatgtgtactcaactcctgcactgtatactctgagggcgttcaagagctgcac 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acagaaacatgtgtactcaactcctgcactgtatactctgagggcgttcaagagctgcac 343

                                                                       
Query: 185 tgaggaagagagatgaaggagtgaagtgaggtggtcaaagggcaaggaggacagagaaga 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cgaggaagagagatgaaggagtgaagtgaggtggtcaaagggcaaggaggacagagaaga 283

                                                                       
Query: 245 ttccatgagccccggtcagctcctgctttgggcactgttgctatggtgactactaagacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttccatgagccccggtcagctcctgctttgggcactgttgctatggtgactactaagacc 223

                                                                       
Query: 305 ttgtcaaattagctgggaacctaaggctctaggaacattgtgggagagggggtggaaact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttgtcaaattagctgggaacctaaggctctaggaacattgtgggagagggggtggaaact 163

                                            
Query: 365 gttagaaccagaggttcaggaagatttttggga 397
           |||||||||||||||||||||||||||||||||
Sbjct: 162 gttagaaccagaggttcaggaagatttttggga 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_k14.g1 MSMg01no357_k14.g1 CHROMAT_FILE:
MSMg01no357_k14.g1 PHD_FILE: MSMg01no357_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:43 2005
         (431 letters)



>mm_chr4_83475877_83476707
          Length = 831

 Score =  826 bits (427), Expect = 0.0
 Identities = 430/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggttgggtgtgttttaacacattaatttttttcatgagttcttgtctggcatggcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggttgggtgtgttttaacacattaatttttttcatgagttcttgtctggcatggcatc 260

                                                                       
Query: 61  acccctcttatacaggatggcatactgcaaaatcacatgacagagaaacacaggaaattt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccctcttatacaggatggcacactgcaaaatcacatgacagagaaacacaggaaattt 320

                                                                       
Query: 121 gggttctagagaaagtttgccatctgactcatctcaaagctttgggaagtaaaccgcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggttctagagaaagtttgccatctgactcatctcaaagctttgggaagtaaaccgcaca 380

                                                                       
Query: 181 gtctccatgggtcttggttttcctggctatagaatgaagactctaaatgaaatgaaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctccatgggtcttggttttcctggctatagaatgaagactctaaatgaaatgaaagtt 440

                                                                       
Query: 241 gaattcctgcacaactctaaaattcttttatttgagctataaataacaatttagaattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattcctgcacaactctaaaattcttttatttgagctataaataacaatttagaattct 500

                                                                       
Query: 301 gaattctatgctttatgttgttcctgcttcacttatattgatgaaatgaatgtttctaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaattctatgctttatgttgttcctgcttcacttatattgatgaaatgaatgtttctaaa 560

                                                                       
Query: 361 tttggttatattctgcaccaaggaaccactcacaaaagcatacgaggtatataaacctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttggttatattctgcaccaaggaaccactcacaaaagcatacgaggtatataaacctta 620

                      
Query: 421 caatataactt 431
           |||||||||||
Sbjct: 621 caatataactt 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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