Query= MSMg01no357_m10.b1 MSMg01no357_m10.b1 CHROMAT_FILE:
MSMg01no357_m10.b1 PHD_FILE: MSMg01no357_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:52 2005
(475 letters)
>mm_chr4_15298060_15298937
Length = 878
Score = 574 bits (297), Expect = e-168
Identities = 329/341 (96%), Gaps = 5/341 (1%)
Strand = Plus / Plus
Query: 5 gaattccaagatttgcttatccccaatattgtccattgaagcagaaaatctttaaaatgc 64
||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccaagaaatgattatcctcaatattgtccattgaagcagaaaatctttaaaatgc 262
Query: 65 cctggctgcttcataggtgataagcttgggctacagtattctgtagagatttcacctgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cctggctgcttcataggtgataagcttgggctacagtattctgtagagatttcacctgcc 322
Query: 125 cctgctgggacaagctggactatttgatccttccctttctct--gccgagagcccttgtc 182
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 cctgctgggacaagctggactatttgatccttccctttctctctgccgagagcccttgtc 382
Query: 183 tttgttatataattacttattatataattaaaggcacatacacagttatatatat--tat 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 tttattatataattacttattatataattaaaggcacatacacagttatatatatactat 442
Query: 241 ctcatatgttctaaaacattttttt-ggaacaaactaaaacagtgttagtattctttgtc 299
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 443 gtcatatgttctaaaacattttttttggaacaaactaaaacactgttagtattctttgtc 502
Query: 300 tcacttttaactttgaaatggttacttagaacatagacacc 340
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcacttttaactttgaaatggttacttagaacatagacacc 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 878
Length adjustment: 10
Effective length of query: 465
Effective length of database: 868
Effective search space: 403620
Effective search space used: 403620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_m10.g1 MSMg01no357_m10.g1 CHROMAT_FILE:
MSMg01no357_m10.g1 PHD_FILE: MSMg01no357_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:52 2005
(459 letters)
>mm_chr4_15452004_15452859
Length = 856
Score = 603 bits (312), Expect = e-177
Identities = 342/354 (96%), Gaps = 6/354 (1%)
Strand = Plus / Minus
Query: 1 aaaccctgactctttggcttcagagttattttatactctctgtggag-aaaatctttctt 59
||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 349 aaaccctgaatctttggcttcagag----tttatactctctgtggagaaaaatctttctt 294
Query: 60 ggaataccacaatgggcatcaatgaaacaggaaaatatataacagactgtattaaaatta 119
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 293 ggaataccacaatgggcatcaatggaacaggaaactatataacagactgtattaaaatta 234
Query: 120 gaaaatgtattattaaatgtaacaccaaagagtaaaaattttccaacaagccaataagaa 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 233 gaaaatgtattattaaatgtaacaccaaagagtaaaaattttccaacaagtcaataagaa 174
Query: 180 aagacagacttaagaccttatagaattatgcactaatgaatagaaactctgtaaatgaga 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aagacagacttaagatcttatagaattatgcactaatgaatagaaactctgtaaatgaga 114
Query: 240 aatgcaaacagcccatatatacatgaaaaatcttgaatttctttacatatcagaaaaatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 aatgcaaacagcccatatatacatgaaaaatcttgaatttctttacatatcagaaaaatt 54
Query: 300 aaaataaaaaaattataataggaaacatctctgaaccaacttgaacgaaaaata 353
|||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 53 aaaataaaaaaa-tgtaataggaaacatctctgaaccaacttgaacgaaaaata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 856
Length adjustment: 10
Effective length of query: 449
Effective length of database: 846
Effective search space: 379854
Effective search space used: 379854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
