MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-357N19
Chromosome	4 (Build37)
Map Location	59,413,941 - 59,414,366
singlet/doublet	singlet
Overlap gene	LOC634731
Upstream gene	Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC666719
Downstream gene	Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221
Link	Open Mouse BAC browser

Click to get alignment info.

name	Edg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14745 MGI:108429
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC675306 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:675306
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	LOC433711 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433711
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Olfr267 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258922 MGI:3030101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI314180 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230249 MGI:2140220
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041581 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041581
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins

name	Ltb4dh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67103 MGI:1914353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2010203O07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72429 MGI:1919679
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gng10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14700 MGI:1336169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI481877 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100155 MGI:2140313
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins

name	LOC433712 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433712
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 mRNAs, 915 ESTs, 6 Proteins

name	Ugcg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22234 MGI:1332243
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041535 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041535
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC634731 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:634731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 1 Protein

name	LOC666719 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Rod1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230257 MGI:1923334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Hsdl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72479 MGI:1919729
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E130308A19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230259 MGI:2442164
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100041592 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041592
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 Proteins pseudo : _no_value

name	1110054O05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66209 MGI:1913459
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snx30 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209131 MGI:2443882
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc46a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30936 MGI:1353616
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041656 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Mup4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17843 MGI:97236
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC620807 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620807
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041658 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041658
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 585 ESTs, 1 Protein

name	LOC620846 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620846
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 Proteins pseudo : _no_value

name	Mup2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17841 MGI:97234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC620882 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620882
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 16 Proteins pseudo : _no_value

name	LOC100041687 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041687
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 574 ESTs, 1 Protein

name	LOC667221 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667221
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	Edg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754047 GeneID:14745 MGI:108429
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2 transcript_id : NM_010336.1

name	Olfr267 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22129054 GeneID:258922 MGI:3030101
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactory receptor 267 transcript_id : NM_146920.1

name	AI314180 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37718969 GeneID:230249 MGI:2140220
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI314180 transcript_id : NM_172381.2

name	LOC100041581 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252422 GeneID:100041581
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins product : similar to novel zinc finger protein (probable ortholog of rat HIT-10) transcript_id : XM_001476620.1

name	Ltb4dh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801462 GeneID:67103 MGI:1914353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leukotriene B4 12-hydroxydehydrogenase transcript_id : NM_025968.3

name	2010203O07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701667 GeneID:72429 MGI:1919679
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2010203O07 gene transcript_id : NM_001033165.1

name	Gng10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84490417 GeneID:14700 MGI:1336169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein (G protein), gamma 10 transcript_id : NM_025277.3

name	AI481877 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252424 GeneID:100155 MGI:2140313
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins product : expressed sequence AI481877 transcript_id : XM_001476641.1

name	LOC433712 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94371879 GeneID:433712
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 mRNAs, 915 ESTs, 6 Proteins product : similar to 67 kda laminin receptor transcript_id : XM_620036.3

name	Ugcg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892814 GeneID:22234 MGI:1332243
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-glucose ceramide glucosyltransferase transcript_id : NM_011673.3

name	LOC100041535 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252420 GeneID:100041535
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041535 transcript_id : XM_001476771.1

name	LOC634731 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252426 GeneID:634731
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 1 Protein product : similar to sushi domain containing 1 transcript_id : XM_988632.2

name	Rod1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142389023 GeneID:230257 MGI:1923334
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ROD1 regulator of differentiation 1 (S. pombe) transcript_id : NM_178164.2

name	Rod1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450284 GeneID:230257 MGI:1923334
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ROD1 regulator of differentiation 1 (S. pombe) transcript_id : NM_144904.1

name	Hsdl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125656149 GeneID:72479 MGI:1919729
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hydroxysteroid dehydrogenase like 2 transcript_id : NM_024255.2

name	E130308A19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62821810 GeneID:230259 MGI:2442164
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E130308A19 gene transcript_id : NM_001015681.1

name	E130308A19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370765 GeneID:230259 MGI:2442164
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E130308A19 gene transcript_id : NM_153158.2

name	1110054O05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62526127 GeneID:66209 MGI:1913459
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110054O05 gene transcript_id : NM_001013577.1

name	Snx30 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781798 GeneID:209131 MGI:2443882
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin family member 30 transcript_id : NM_172468.2

name	Slc46a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386973 GeneID:30936 MGI:1353616
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 46, member 2 transcript_id : NM_021053.3

name	Mup4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678967 GeneID:17843 MGI:97236
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : major urinary protein 4 transcript_id : NM_008648.1

name	LOC620807 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:124486864 GeneID:620807
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : novel member of the major urinary protein (Mup) gene family transcript_id : NM_001081285.1

name	LOC100041658 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252428 GeneID:100041658
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 585 ESTs, 1 Protein product : similar to major urinary protein 1 transcript_id : XM_001476969.1

name	Mup2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113930711 GeneID:17841 MGI:97234
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : major urinary protein 2 transcript_id : NM_008647.3

name	Mup2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113930713 GeneID:17841 MGI:97234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : major urinary protein 2 transcript_id : NM_001045550.1

name	LOC100041687 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252431 GeneID:100041687
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 574 ESTs, 1 Protein product : similar to major urinary protein 1 transcript_id : XM_001477004.1

name	Edg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754048 CCDS:CCDS18212.1 GeneID:14745 MGI:108429
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : G-protein coupled receptor 26; clone 4.9 product : endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2 protein_id : NP_034466.1

name	Olfr267 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22129055 CCDS:CCDS18213.1 GeneID:258922 MGI:3030101
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : GA_x6K02T2N78B-1272842-1273783; olfactory receptor MOR262-1 product : olfactory receptor 267 protein_id : NP_667131.1

name	AI314180 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37718970 CCDS:CCDS18214.1 GeneID:230249 MGI:2140220
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 note : novel protein containing 10 HEAT domains product : hypothetical protein LOC230249 protein_id : NP_759013.2

name	LOC100041581 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252423 GeneID:100041581
definition	codon_start : 1 product : similar to novel zinc finger protein (probable ortholog of rat HIT-10) protein_id : XP_001476670.1

name	Ltb4dh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385466 CCDS:CCDS18215.1 GeneID:67103 MGI:1914353
definition	GO_function : GO:0047522 - 15-oxoprostaglandin 13-oxidase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] codon_start : 1 product : leukotriene B4 12-hydroxydehydrogenase protein_id : NP_080244.1

name	2010203O07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701668 CCDS:CCDS18216.1 GeneID:72429 MGI:1919679
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC72429 protein_id : NP_001028337.1

name	Gng10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384616 CCDS:CCDS18217.1 GeneID:14700 MGI:1336169
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005083 - small GTPase regulator activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] codon_start : 1 note : guanine nucleotide binding protein (G protein) gamma 10 product : guanine nucleotide binding protein (G protein), gamma 10 protein_id : NP_079553.1

name	AI481877 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252425 GeneID:100155 MGI:2140313
definition	codon_start : 1 product : hypothetical protein LOC100155 protein_id : XP_001476691.1

name	LOC433712 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:63514363 GeneID:433712
definition	codon_start : 1 product : similar to 67 kda laminin receptor protein_id : XP_620036.1

name	Ugcg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106443 CCDS:CCDS18219.1 GeneID:22234 MGI:1332243
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008120 - ceramide glucosyltransferase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 note : ectoplacental cone, invasive trophoblast giant cells, extraembryonic ectoderm and chorion sequence 21; UDP-glucose ceramide glucosyltransferase-like product : UDP-glucose ceramide glucosyltransferase protein_id : NP_035803.1

name	LOC100041535 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252421 GeneID:100041535
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476821.1

name	LOC634731 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252427 GeneID:634731
definition	codon_start : 1 product : hypothetical protein protein_id : XP_993726.2

name	Rod1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450285 CCDS:CCDS18220.1 GeneID:230257 MGI:1923334
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : ROD1 regulator of differentiation 1 isoform 1 protein_id : NP_659153.1

name	Rod1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30039680 CCDS:CCDS18221.1 GeneID:230257 MGI:1923334
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : ROD1 regulator of differentiation 1 isoform 2 protein_id : NP_835458.1

name	Hsdl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125656150 GeneID:72479 MGI:1919729
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : hydroxysteroid dehydrogenase-like 2 protein product : hydroxysteroid dehydrogenase like 2 protein_id : NP_077217.2

name	E130308A19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62821811 CCDS:CCDS18223.1 GeneID:230259 MGI:2442164
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : hypothetical protein LOC230259 isoform 2 protein_id : NP_001015681.1

name	E130308A19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24233509 CCDS:CCDS18224.1 GeneID:230259 MGI:2442164
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : hypothetical protein LOC230259 isoform 1 protein_id : NP_694798.1

name	1110054O05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62526128 CCDS:CCDS18225.1 GeneID:66209 MGI:1913459
definition	codon_start : 1 product : hypothetical protein LOC66209 protein_id : NP_001013595.1

name	Snx30 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859789 CCDS:CCDS18226.1 GeneID:209131 MGI:2443882
definition	GO_function : GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : novel PX domain containing protein product : sorting nexin family member 30 protein_id : NP_766056.1

name	Slc46a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560331 CCDS:CCDS18227.1 GeneID:30936 MGI:1353616
definition	GO_component : GO:0009986 - cell surface [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0015520 - tetracycline:hydrogen antiporter activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0015904 - tetracycline transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : putative thymic stromal co-transporter TSCOT; thymic stromal cotransporter product : solute carrier family 46, member 2 protein_id : NP_066395.2

name	Mup4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678968 CCDS:CCDS18228.1 GeneID:17843 MGI:97236
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005550 - pheromone binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : major urinary protein 4 protein_id : NP_032674.1

name	LOC620807 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:124486865 GeneID:620807
definition	codon_start : 1 product : similar to Major urinary protein 4 precursor (MUP 4) protein_id : NP_001074754.1

name	LOC100041658 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252429 GeneID:100041658
definition	codon_start : 1 product : similar to major urinary protein 1 protein_id : XP_001477019.1

name	Mup2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113930714 GeneID:17841 MGI:97234
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005550 - pheromone binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : 2610016E04Rik; novel member of the major urinary protein (Mup) gene family product : major urinary protein 2 protein_id : NP_001039015.1

name	Mup2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113930712 CCDS:CCDS18230.1 GeneID:17841 MGI:97234
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005550 - pheromone binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : 2610016E04Rik; novel member of the major urinary protein (Mup) gene family product : major urinary protein 2 protein_id : NP_032673.3

name	LOC100041687 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252432 GeneID:100041687
definition	codon_start : 1 product : similar to major urinary protein 1 protein_id : XP_001477054.1

name	LOC666719 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666719
definition	number : 1 pseudo : _no_value

name	LOC100041592 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041592
definition	number : 1 pseudo : _no_value

name	LOC100041656 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041656
definition	number : 1 pseudo : _no_value

name	LOC100041656 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041656
definition	number : 2 pseudo : _no_value

name	LOC100041656 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041656
definition	number : 3 pseudo : _no_value

name	LOC620846 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620846
definition	number : 1 pseudo : _no_value

name	LOC620846 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620846
definition	number : 2 pseudo : _no_value

name	LOC620846 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620846
definition	number : 3 pseudo : _no_value

name	LOC620846 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620846
definition	number : 4 pseudo : _no_value

name	LOC620846 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620846
definition	number : 5 pseudo : _no_value

name	LOC620846 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620846
definition	number : 6 pseudo : _no_value

name	LOC675306 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252416 GeneID:675306
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to STAT3-interacting protein as a repressor pseudo : _no_value transcript_id : XR_032762.1

name	LOC433711 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252417 GeneID:433711
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical gene supported by AK078800 transcript_id : XR_035311.1

name	LOC620882 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252430 GeneID:620882
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 16 Proteins product : similar to novel member of the major urinary protein (Mup) gene family pseudo : _no_value transcript_id : XR_032925.1

name	LOC667221 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252433 GeneID:667221
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : similar to novel member of the major urinary protein (Mup) gene family pseudo : _no_value transcript_id : XR_035681.1

clone name	MSMg01-328H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-201C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496G01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-114L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324J05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-402J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159G02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-357N19.T7 (MSMg01no357_n19.b1)	MSMg01-357N19.TJ (MSMg01no357_n19.g1)
ACC	AG467658	AG467659
length	797	802
length of high quality (start - end)	407 (41 - 447)	425 (69 - 493)
definition	CHROMAT_FILE: MSMg01no357_n19.b1 PHD_FILE: MSMg01no357_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:58 2005	CHROMAT_FILE: MSMg01no357_n19.g1 PHD_FILE: MSMg01no357_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:58 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC TTTGGCTGACAAGCACCTGAAAAATGTTCAACATCCTTAATCATCAGGGG AATGCAAACCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG CTAAGTTCAAAAATTCAGGTGACAGCAGATGCTAGCAAGGATGTGGAGAA ATGTGGGGCGTGGGTGTAGGGAAAGAGGGGCGAGGGAGAGAGCCCGCCTC GAACCTGTGTTCTGGGCGGGCAGATGGGGGAGGACTGCCGTACCCTTTCC ACTGGCCCTGCATGGGTGTCTGGCTGTGTGGAGCCACTGATCCCAGCTAG GCGGGTGGTGGACAAGGGGCAGCCCCCATACCAGGTTCTCAGTCTCCGGC ATCCCACACTGGATACTGCAGAGGAGATGAGAAAAGAATAGGGGCCCCAT GACAACACTCTCTGCCCCAGGGATACAATAATAATGCTTAGGGATAGAGG TTCCCACGCAGGCGAGTGCCCTTTATCCCGGCCTTGGTTGGATCACTGTA ATGCCTTTTGTTCTGTATTTTTGTTCGCTTCCTCTTCATGAATATATCTA CTCCCTCTTTCCATCTTTATAGTTCCTTTCTTTTCCCTATTCCTCTTCTT TTTTTCCTCCCCCTCTTTTTTCTCCCCCCTTCCTTCCTTCCTTCTATATC TTTCTTATCCCTCCTTATTCTTTTCTTCTTCTTTCCATCTTTCATCCTTT CCCTTTTTTTCCCTTTCTTTCACTCTCCTCCTTTTTCCTCTTTCTTT	ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXAGCTATGTGTAGTTAGACCCTCCCTGTGGGGC TGTTTGGGCACCTCATTGTGTCTATCATTGAGATGGGGGGTTGGAATACA ATGTCTCAGTACGGGGCGAGATGGATTTAGAAAATGTTATTGTAATTGTT AGAGGAAAACGGAAGAATTATTCTATGCCACTGTGCTCTCTGTGCACGGG TAGCTTATTAGCTGCTCTAACTAAGCTAATGAGCTCATTAGTACCCAAAA GGCCACATGCCCTTAAGGCCGGAGGGAGACAGAAATTACTTTTTGATGTA GTTTGCAATCTGAAGACTTCTATCAGCTTTTGCCCTGACAAAACAATATA TTTTCTCCAGCTCATGTTCATTGAGAGAGCTCGTTTGGGAGAAAAAACAA TTCCATTTCACACAATGGCACTTACTGTCAATAACTAGTGTTTAGTTTGG AAACAGCTAGAATTGAAACACTTCAGAAGCTGCGTAGGAGGTGACAGGGC CGGGTTACAGCCTGAGTGAGGAGGACGGGGCTTCTCCACGGTCTTGTTCG GGATTTTCTATTCGTAAAGGGGGGTAATCACGCTCAAGGCTCTCTAGCCC CCTGTGGTGGGGTATGGTTCTCTTTTCCAAAGATAATAATATAATTCTCC GGTTTCGAGGGTTCTCTGCTTCCTTAATCTCTCTTTTCCTAGCCATCCGA TTATATTAGGCCCCTGTCCGCATTTTTCTCTTATTTTTATTTTCTTGTCG TG
quality values	Open. Hide. 37 37 37 39 44 22 21 12 12 12 18 34 37 31 31 41 37 37 41 59 29 29 21 21 21 21 25 9 9 9 11 11 11 25 25 30 28 28 28 28 28 59 47 44 29 23 23 28 32 33 59 59 46 46 28 25 11 21 11 12 12 20 30 34 41 41 33 33 37 37 37 35 35 32 36 36 36 37 37 37 40 47 47 47 47 59 59 53 53 68 68 68 68 68 68 68 68 68 68 68 48 48 48 48 39 48 48 68 68 68 68 68 68 68 68 68 68 57 59 57 57 57 42 48 46 50 50 50 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 50 50 47 57 57 57 68 68 57 57 57 57 57 57 51 51 50 50 50 50 57 57 54 50 50 50 50 50 68 68 57 57 52 57 57 57 59 68 59 59 59 57 57 57 57 57 57 57 57 57 59 68 57 57 57 57 57 57 57 59 59 59 59 52 52 52 59 52 52 57 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 62 62 62 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 57 57 57 52 52 52 52 57 57 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 57 57 52 57 52 57 57 59 59 59 57 52 45 42 43 43 44 18 32 24 35 32 27 20 23 43 44 57 57 52 52 52 59 57 57 57 52 52 52 57 54 57 57 59 57 59 57 57 57 54 54 50 47 43 32 32 20 32 32 43 43 43 32 23 23 23 32 27 32 32 42 42 43 57 59 59 59 54 48 48 48 43 42 42 30 30 32 42 47 57 43 43 39 43 43 59 57 44 44 30 30 30 41 41 41 30 39 42 48 48 57 42 42 37 27 21 12 12 19 21 24 30 34 34 23 25 25 28 30 34 23 19 19 19 19 25 28 28 32 32 30 28 21 19 12 12 14 23 15 14 14 13 19 10 10 10 10 12 12 12 11 13 11 11 11 11 17 19 11 11 11 10 9 9 9 9 9 11 12 12 11 11 11 8 8 8 8 8 8 13 15 15 10 9 9 9 10 9 10 10 10 21 15 13 13 10 10 10 10 10 10 11 11 11 13 10 9 9 8 6 8 8 11 12 8 8 8 8 9 11 10 10 10 13 10 10 9 9 9 10 15 15 11 8 8 8 8 8 6 6 8 6 6 8 8 10 10 9 9 11 8 6 6 6 8 8 9 12 12 14 14 10 8 6 6 11 8 12 12 11 8 8 15 8 8 10 8 8 8 8 8 8 8 10 12 11 8 8 8 8 8 8 8 10 10 8 8 8 11 9 9 10 10 13 11 11 8 8 6 6 8 8 8 8 9 11 12 12 14 19 15 10 8 8 8 8 9 11 9 9 9 8 10 8 8 8 8 13 15 15 13 11 9 8 8 8 8 8 8 8 8 9 12 8 8 8 13 17 16 17 15 8 8 8 8 8 8 8 9 7 10 6 6 8 6 9 9 9 13 13 10 9 8 8 8 12 10 9 9 12 15 11 15 15 15 15 9 9 9 10 10 10 16 19 17 16 10 10 10 11 8 9 9 9 10 10 15 11 12 12 22 24 23 11 10 10 9 9 12 15 15 22 17 11 11 11 11 13 25 21 12 12 11 12 12 12 12 14 19 13 16 12 9 9 9 17 13 10 9 13 15 7 7 7 8 7 8 8 8 10 14 9 10 13 13 13 8 8 8 8 9 9 9 9 8 6 6 6	Open. Hide. 6 6 8 8 9 12 13 15 25 25 36 31 41 39 39 39 39 39 39 39 39 34 31 25 23 9 9 9 11 11 11 17 10 12 12 21 21 37 32 32 37 32 33 33 33 33 33 41 42 41 39 30 25 14 16 23 23 30 30 37 37 43 29 29 30 30 35 30 36 36 36 47 53 53 53 53 57 53 53 53 53 53 53 68 68 68 68 68 68 59 59 48 57 48 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 47 57 54 57 57 57 57 57 68 68 57 57 57 57 57 48 48 47 47 47 50 59 68 59 57 57 57 57 57 57 68 68 68 57 50 47 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 57 50 50 51 51 51 51 68 68 68 57 57 47 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 59 59 59 59 59 59 59 68 59 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 59 57 57 52 52 52 52 52 52 52 52 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 50 59 59 59 68 68 68 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 59 59 57 57 59 59 59 68 68 68 68 68 68 54 54 54 54 57 57 57 68 68 57 57 59 59 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 48 48 48 48 48 48 57 44 44 43 43 43 39 37 37 37 37 37 41 43 43 40 37 31 37 31 35 35 41 41 37 37 37 37 37 39 39 39 39 30 39 37 44 43 36 28 28 28 23 25 34 32 37 32 41 41 47 59 59 47 37 37 24 24 15 19 16 30 34 47 37 34 30 25 24 24 21 21 30 23 23 21 20 23 24 21 19 24 28 18 18 15 23 24 28 23 23 25 21 24 14 12 15 11 9 9 11 12 16 11 9 9 10 10 10 10 15 10 8 6 6 7 7 10 11 11 11 13 16 15 21 16 16 18 24 22 15 16 10 10 9 8 7 7 7 8 10 11 15 13 11 11 15 19 19 16 17 17 16 16 24 19 25 22 27 15 14 10 14 12 10 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 8 10 8 8 8 6 6 8 8 8 8 8 8 8 11 11 15 18 13 13 12 15 12 11 11 11 10 9 9 9 9 9 9 10 11 11 11 11 8 8 8 8 8 8 12 13 13 13 10 9 8 11 6 6 6 6 8 8 6 6 6 6 6 6 8 8 10 12 16 10 10 10 17 23 12 10 10 10 10 10 8 8 8 8 8 6 6 8 7 7 10 10 6 6 8 8 10 10 10 10 10 12 10 8 8 6 6 6 6 11 12 10 14 10 10 8 7 8 10 10 7 6 6 8 8 10 11 8 8 8 8 8 8 9 9 11 15 8 8 6 6 8 8 6 6 8 8 8 10 10 10 11 10 9 9 9 9 9 9 10 10 10 9 9 9 9 8 8 10 8 8 8 17 19 33 19 19 12 12 10 9 10 10 15 13 10 9 8 9 9 9 14 14 15 15 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no357_n19.g1 MSMg01no357_n19.g1 CHROMAT_FILE:
MSMg01no357_n19.g1 PHD_FILE: MSMg01no357_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:58 2005
         (425 letters)



>mm_chr4_59413741_59414566
          Length = 826

 Score =  808 bits (418), Expect = 0.0
 Identities = 424/426 (99%), Gaps = 1/426 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctatgtgtagttagaccctccctgtggggctgtttgggcacctcattgtgtctatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctatgtgtagttagaccctccctgtggggctgtttgggcacctcattgtgtctatcat 260

                                                                       
Query: 61  tgagatgggggg-ttggaatacaatgtctcagtacggggcgagatggatttagaaaatgt 119
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tgagatgggggggttggaatacaatgtctcagtacggggcgagttggatttagaaaatgt 320

                                                                       
Query: 120 tattgtaattgttagaggaaaacggaagaattattctatgccactgtgctctctgtgcac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgtaattgttagaggaaaacggaagaattattctatgccactgtgctctctgtgcac 380

                                                                       
Query: 180 gggtagcttattagctgctctaactaagctaatgagctcattagtacccaaaaggccaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtagcttattagctgctctaactaagctaatgagctcattagtacccaaaaggccaca 440

                                                                       
Query: 240 tgcccttaaggccggagggagacagaaattactttttgatgtagtttgcaatctgaagac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcccttaaggccggagggagacagaaattactttttgatgtagtttgcaatctgaagac 500

                                                                       
Query: 300 ttctatcagcttttgccctgacaaaacaatatattttctccagctcatgttcattgagag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctatcagcttttgccctgacaaaacaatatattttctccagctcatgttcattgagag 560

                                                                       
Query: 360 agctcgtttgggagaaaaaacaattccatttcacacaatggcacttactgtcaataacta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctcgtttgggagaaaaaacaattccatttcacacaatggcacttactgtcaataacta 620

                 
Query: 420 gtgttt 425
           ||||||
Sbjct: 621 gtgttt 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 826
Length adjustment: 9
Effective length of query: 416
Effective length of database: 817
Effective search space:   339872
Effective search space used:   339872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information