Query= MSMg01no358_c05.b1 MSMg01no358_c05.b1 CHROMAT_FILE:
MSMg01no358_c05.b1 PHD_FILE: MSMg01no358_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:20 2005
(494 letters)
>mm_chr4_44631647_44632540
Length = 894
Score = 822 bits (425), Expect = 0.0
Identities = 473/489 (96%), Gaps = 3/489 (0%)
Strand = Plus / Plus
Query: 7 gaattcccacagctttccggtggcaaagcctagctgtcccatcctgctataaagctagca 66
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcccacagctttcccgtggcaaagcctagctgtcccatcctgctataaagctagca 266
Query: 67 ataagcaggggttcttgcctctcaaggaatgcgggactcctgtctaccaagaggcatgag 126
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 267 ataagcaggggttcttgcctctcaaggaatgtgagactcctgtctaccaagaggcatgag 326
Query: 127 taggagatggaaaagggggagcccccattcccaggtacctgacataggaggagaggaccc 186
||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||
Sbjct: 327 taggagatggaaaagggagagcccctattcccaggtacctgacatgggaggagaggagcc 386
Query: 187 atcccaaggtgcctatgtttcaccctcttttatactttccggctatgaggaggagaggga 246
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 387 atcccaaggtgcctatgtttcaccctcttttatactttctggctatgaggaggagaggga 446
Query: 247 gggtatcctgggaccatgaagaaatgataacggaacagttcccttctaagagagaagtat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gggtatcctgggaccatgaagaaatgataacggaacagttcccttctaagagagaagtat 506
Query: 307 cagatagagtaggattggggtcttctcctgaacccctctaccagccctgcggctgctcag 366
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 507 cagatagagtaagagtggggtcttctcctgaacccctctaccagccctgcagctgctcag 566
Query: 367 cagagtagaaccctagctactctttccctccccctccccctccccctttcctttcccc-c 425
||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct: 567 cagagtagatccctagctactctttccctcccc-tccccctccccctttcctt-ccccac 624
Query: 426 tccctccttccctcccttaggccccttccgttccctgtcagaacagactttctatcaggc 485
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccctcattccctcccttaggccccttccgttccctgtcagaacagactttctatcaggc 684
Query: 486 agttctctg 494
|||||||||
Sbjct: 685 agttctctg 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_c05.g1 MSMg01no358_c05.g1 CHROMAT_FILE:
MSMg01no358_c05.g1 PHD_FILE: MSMg01no358_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:20 2005
(518 letters)
>mm_chr4_44795177_44796097
Length = 921
Score = 977 bits (505), Expect = 0.0
Identities = 516/521 (99%), Gaps = 3/521 (0%)
Strand = Plus / Minus
Query: 1 tcccattctgaaagcttggacagacttcagaacatgtataaaatcaaagccaccaaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tcccattctgaaagcttggacagacttcagaacatgtataaaatcaaagccaccaaattt 784
Query: 61 ttactttggtcagttttgtttggtaggagagagaatatttttctttaaaaatattttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ttactttggtcagttttgtttggtaggagagagaatatttttctttaaaaatattttttt 724
Query: 121 aagagggaaggaagaaaaactattttcaatgccccttttcctccaaaaaa---atgtttg 177
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 723 aagagggaaggaagaaaaactattttcaatgccccttttcctccaaaaaaattatgtttg 664
Query: 178 agatattcagtataaatactctttaatttattatacttaaagcactaatatggaactaaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agatattcagtataaatactctttaatttattatacttaaagcactaatatggaactaaa 604
Query: 238 atgtccttataaacattaaattataaggtaaggtatttgttctttttcagagtccctgaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 atgtccttataaacattaaattataaggtaaggtatttgttctttttcagagtccctgaa 544
Query: 298 tttatgaaacatcctacacacattctacaagataaaagaggttcaattaacttagttaaa 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 543 tttatgaaacatcctacacacattctacaagataaaagaggttcaattaacttatttaaa 484
Query: 358 cagttaattcactgcaaaactgctaacagaaggtaaaactggaaatccaaaagcaaccaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cagttaattcactgcaaaactgctaacagaaggtaaaactggaaatccaaaagcaaccaa 424
Query: 418 ttcctcaaggccttgactattccctagagccctagaaaagagatagttataaaatgaata 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttcctcaaggccttgactattccctagagccctagaaaagagatagttataaaatgaata 364
Query: 478 attaatccccaggtgactcccttgccacccatatccactgg 518
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 363 attaatccccaggtgactctcttgccacccatatccactgg 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 921
Length adjustment: 10
Effective length of query: 508
Effective length of database: 911
Effective search space: 462788
Effective search space used: 462788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
