Query= MSMg01no358_l14.b1 MSMg01no358_l14.b1 CHROMAT_FILE:
MSMg01no358_l14.b1 PHD_FILE: MSMg01no358_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:04 2005
(496 letters)
>mm_chr4_56173059_56173954
Length = 896
Score = 891 bits (461), Expect = 0.0
Identities = 488/503 (97%), Gaps = 11/503 (2%)
Strand = Plus / Plus
Query: 5 gaattcacttccatgacaactgtgaaactgagccgcctctgagctccatcacctactgca 64
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 194 gaattcacttccatgacaactgtgaaattgagccccctctgagctccatcacctactgca 253
Query: 65 gggctggtgcatagtgg------gtg-----gtgtcccagtgtggatctgaatgaatgta 113
||||||||||||||||| ||| |||||||||| ||||||||||||||||||
Sbjct: 254 gggctggtgcatagtgggtcccagtgtcccagtgtcccagtatggatctgaatgaatgta 313
Query: 114 atcaggcacaaacgtgtttgtgcttttgatgcattgtctaattcaagagaacagctaagc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atcaggcacaaacgtgtttgtgcttttgatgcattgtctaattcaagagaacagctaagc 373
Query: 174 agtctggaagacagacgtgcaaaggccgatgatggtcactcagagtgtgggaagatccct 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agtctggaagacagacgtgcaaaggccgatgatggtcactcagagtgtgggaagatccct 433
Query: 234 tgctttggtaaaaaggtcctactagcaatttgggacccattgcctattgctgtatgtagt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgctttggtaaaaaggtcctactagcaatttgggacccattgcctattgctgtatgtagt 493
Query: 294 ccctcttagtcaccagaaggatgactcaaaatgggtcacagagagagcaacatgggagga 353
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ccctgttagtcaccagaaggatgactcaaaatgggtcacagagagagcaacatgggagga 553
Query: 354 tgttaatgagtacgctggatgaatcagatgggcctggtttgcttcatattcggtctgatc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgttaatgagtacgctggatgaatcagatgggcctggtttgcttcatattcggtctgatc 613
Query: 414 cagtttccacgcatcttgcgaaaagaaggacacacgtgagggtgacattttaatccaaat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cagtttccacgcatcttgcgaaaagaaggacacacgtgagggtgacattttaatccaaat 673
Query: 474 gtatcaaaaatgttttgtgatat 496
|||||||||||||||||||||||
Sbjct: 674 gtatcaaaaatgttttgtgatat 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_l14.g1 MSMg01no358_l14.g1 CHROMAT_FILE:
MSMg01no358_l14.g1 PHD_FILE: MSMg01no358_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:04 2005
(493 letters)
>mm_chr4_56359563_56360455
Length = 893
Score = 669 bits (346), Expect = 0.0
Identities = 352/354 (99%)
Strand = Plus / Minus
Query: 140 aagtttctttcaagtccaactgatcgatgtttcttttccttatttttcttattatcaatg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 aagtttctttcaagtccaactgatcgatgtttcttttccttatttttcttattatcaatg 834
Query: 200 gttgtttgatttatgccaaatgatttttatgtaactagatactatgtgggctttctcttt 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gttgtttgatttatgccaaatgatttttatgtaactagatactatgtgggctttctcttt 774
Query: 260 tattctagcaaaatgataaattgcatgaattgattgtaaaatcttgaaccattgttccat 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tattctagcaaaatgataaattgcatgaattgattgtaaaatcttgaaccattgttccat 714
Query: 320 aaaccgcatttagtcatggtagttatcatatctgtgtggccaggaagtgattgccaaggt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aaaccgcatttagtcatggtagttatcatatctgtgtggccaggaagtgattgccaaggt 654
Query: 380 gcacaaatgggttatctccagagttagtcagccatgaatgcccatttaacttggtgtctt 439
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 653 gcacaaatgggttatctccagagttagtcagccatgaacgcccatttaacttggtgtctt 594
Query: 440 tcatagctcctgtttttaactcatgaagccatatagctctgggaatcttgccag 493
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 593 tcatagctcctgtttttaactcatgaagccatatagctctgggaatcttaccag 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
