BAC Information

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BAC

Clone NameMSMg01-358M19
Chromosome4 (Build37)
Map Location 44,669,899 - 44,670,395
singlet/doubletsinglet
Overlap genePax5
Upstream geneSerf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
Downstream gene5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358M19.T7 (MSMg01no358_m19.b1)MSMg01-358M19.TJ (MSMg01no358_m19.g1)
ACCAG468368AG468369
length743744
length of high quality
(start - end)		501 (37 - 537)455 (66 - 520)
definitionCHROMAT_FILE: MSMg01no358_m19.b1 PHD_FILE: MSMg01no358_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:09 2005CHROMAT_FILE: MSMg01no358_m19.g1 PHD_FILE: MSMg01no358_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATT
GATCAATCATGTTTCGGTGATAGTACCATTTCACTGGCTTATTGCTTCTT
CATTTCAGAGCTTGACCTGTTAGATATACTCGGACTGGCTCGACTTCTCT
TGGATACACCGAGATCAGCCACTGCCTGCCAACGTGTGTCATCTCCCGTC
CCAGCTGAAAAGAACTTGAAAGGCTTTTGTGTGTATCTGAAGTGTGTTTC
CCCACCAAGCATGCGCATAGGAGGGGTGGATTTATGGAGAACAGCAACCA
CAAGCGCCAAGAGGGCTCTTCATTCTGCTCCGAACCCCTATTCTTTCTTC
CCTATGGGAGCAAGTTGACTCTGTGCTCAGCAAGAGCGTATTTCTGTATT
AGCCAAGTGGCATACATGCCTAGAGGAAAAAAGGTATGTTAGACAATGAT
CAAAGCAGCAATCTCTAAACCCCAGACATGCTCAGGCTGAGTGCTTATCT
GGTTCTAACAATGACGTCAGACAACAGCAACAGATTATGGCTCCCAGTGT
GCAGATGAAGAGGAAAACGCGGTCTGAGACGCAAAGGTAGCTTGTCCGAA
AATCTCAGTGGTACCACGGCCAGGAATGACAAAAAGCCCACGGAATTTCA
CCCCTTGGTGGCTCTGGACCCCAAAGACCCCCCCTTAGGTACTTTCAAAG
CCCCCAATTAGTTTCCGCCCAGCCTTTTCTTTTTTGGGCCTTG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGAGAGCCAAGGCTACACAGAGAAACCCTGTAC
TTTTGTTTCAAGATACAGAGAAATCAAGCTGGAACTAACTTTCATTGCAC
TAAAAGTAGCAGGTGTTATGCAGCCTACCAGAGGAGAAAAAGCTATGAGT
ACTAAACCATCAATCAGCCTGGCAAGTTTTGCATATTGGTATGAGAGTGG
CATGATTGTTAAGGAAATAACCAACGGCTTTCTGACTGGACTGAGGTCTG
CTCCACAGGAAGAAATTGATGCCTGGTACTGTAAACTTGATCAAAATTCC
ATGGTAGGGAAATTCACAGGAAAATCTAGTATTGATGTTTTGCTAAATGG
TCATTGTCAAACAGCTTTTCATGTTGACAAAGATACCCATAGATCTTTGC
TCTTCTCAACTTTTGTCAGAGAAACCTCTATTTGCAGGGAGTAACAGTTA
ATACAGAGACTCATAATTGGGCATAAGTGACTGAAAATAAATGACTCTGG
GTCCTCTGAGTGTTCTAAATGGGACATCTAAATCACCCCCCCCAGACTCC
TTCTAGAAGTATAGATAGAAAGAATTGTGGAACCCAAAACGGGGGGGAAT
GTGGGGAAAGGCTCCCTTTTGAAAAAACATGGGCAACGGGACCCAGGAAC
CCAAACCCCCGGTGTTTACCGGCCCCGCCCACACTCTAAGCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_m19.b1 MSMg01no358_m19.b1 CHROMAT_FILE:
MSMg01no358_m19.b1 PHD_FILE: MSMg01no358_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:09 2005
         (501 letters)



>mm_chr4_44669695_44670595
          Length = 901

 Score =  930 bits (481), Expect = 0.0
 Identities = 493/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattgatcaatcatgtttcggtgatagtaccatttcactggcttattgcttctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattgatcaatcatgtttcggtgatagtaccatttcactggcttattgcttctt 264

                                                                       
Query: 65  catttcagagcttgacctgttagatatactcggactggctcgacttctcttggatacacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 catttcagagcttgacctgttagatatactcggactggctcgacttctcttggatacaca 324

                                                                       
Query: 125 gagatcagccactgcctgccaacgtgtgtcatctcccgtcccagctgaaaagaacttgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagatcagccactgcctgccaacgtgtgtcatctcccgtcccagctgaaaagaacttgaa 384

                                                                       
Query: 185 aggcttttgtgtgtatctgaagtgtgtttccccaccaagcatgcgcataggaggggtgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggcttttgtgtgtatctgaagtgtgtttccccaccaagcatgcgcataggaggggtgga 444

                                                                       
Query: 245 tttatggagaacagcaaccacaagcgccaagagggctcttcattctgctccgaaccccta 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttatggtgaacagcaaccacaagcgccaagagggctcttcattctgctccgaaccccta 504

                                                                       
Query: 305 ttctttcttccctatgggagcaagttgactctgtgctcagcaagagcgtatttctgtatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctttcttccctatgggagcaagttgactctgtgctcagcaagagcgtatttctgtatt 564

                                                                       
Query: 365 agccaagtggcatacatgcctagaggaaaaaaggtatgttagacaatgatcaaagcagca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agccaagtggcatacatgcctagaggaaaaaaggtatgttagacaatgatcaaagcagca 624

                                                                       
Query: 425 atctctaaaccccagacatgctcaggctgagtgcttatctggttctaacaatgacgtcag 484
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atctctacaccccagacatgctcaggctgagtgcttatctggttctaacaatgacgtcag 684

                            
Query: 485 acaacagcaacagatta 501
           ||| |||||||||||||
Sbjct: 685 acaccagcaacagatta 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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