BAC Information

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BAC

Clone NameMSMg01-358P19
Chromosome4 (Build37)
Map Location 80,781,131 - 80,781,286
singlet/doubletsinglet
Overlap genenone
Upstream geneTyrp1, D4Bwg0951e
Downstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358P19.T7 (MSMg01no358_p19.b1)MSMg01-358P19.TJ (MSMg01no358_p19.g1)
ACCAG468511AG468512
length711721
length of high quality
(start - end)
550 (35 - 584)524 (67 - 590)
definitionCHROMAT_FILE: MSMg01no358_p19.b1 PHD_FILE: MSMg01no358_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:23 2005CHROMAT_FILE: MSMg01no358_p19.g1 PHD_FILE: MSMg01no358_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGTCACNTATACGACTCACTATAGGTTCCAGGATCCGCGGAATTCCAGT
TAAATTTCACATTTAGTTAATACATGTGTCATCTTATATTTTCTGTTACT
TTATCCCCCAAACTGGATAATTTATGTAGGAAATGAATTTACTTTGGATT
ATGATTCTAGAGGCTGGGAAAGCTACAGACAAATGCTGGATCTTATTCGA
TATCAGATAAGGGTCTTTTGTTTTCAACTTAACATAGCAGAAGGAGTTTT
ATGGTGGAACAAGATCAGGCTCTTGCTCTTCATCTACAGCAATCATGTTA
TCATGAGGTCACTGTATGGGTGACTTCATCTAATCCTGATTAGTCCCAGA
AAGTTCCATCTTCAAATAACATTAGCATATAACACTGAGAACCAATTTTC
CAACAAAAATTTCCACAAGGCTCTTTTATAACAATTTCTTTTAATGTGAA
ATATTCCCTTCTGGAGGAAGGCTCACTGAGACTTGGGAAATAAAAGAAAT
TTATAATATCAGTCTGTAATATCAGTATCAGTTTCAGGAAGCTCCCCATA
CTTACAAGATCCACAAAACCCTTGCCCAGGTTATGTGAGTAGAAACCATT
CCTGAGGAAAGGGGACTTTTCAGACAGGNAGAGCTGCCTGCACATAGTGA
GTGAGATTCCCTGAGTTATAACCTTTGATTATGCTTAGGCAGGCTTTTTC
GTGGAGAATGN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCCCACCAAATGTACTCCCTGATAAAGGGATATTA
ACCCAAAACCTAGGAAACCCCAGATATAAGAAACAATTTCCTTAACCCTT
GGAAACTCAGGAAAAATGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_p19.b1 MSMg01no358_p19.b1 CHROMAT_FILE:
MSMg01no358_p19.b1 PHD_FILE: MSMg01no358_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:23 2005
         (550 letters)



>mm_chr4_80780537_80781486
          Length = 950

 Score =  255 bits (132), Expect = 5e-72
 Identities = 150/156 (96%)
 Strand = Plus / Minus

                                                                       
Query: 395 taacaatttcttttaatgtgaaatattcccttctggaggaaggctcactgagacttggga 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 750 taacaatttcttttaatgtgaaatattcccttctggaggaaggctcactgacacttggga 691

                                                                       
Query: 455 aataaaagaaatttataatatcagtctgtaatatcagtatcagtttcaggaagctcccca 514
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 690 aataaaagaaatttataatatcagtttgtaatatcagtatcagtttcaggatgctcctca 631

                                               
Query: 515 tacttacaagatccacaaaacccttgcccaggttat 550
           ||||||||||||||| ||||||||| ||||||||||
Sbjct: 630 tacttacaagatccaaaaaacccttccccaggttat 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)