BAC Information

Click to search

BAC

Clone NameMSMg01-359A19
Chromosome4 (Build37)
Map Location 110,577,083 - 110,765,183
singlet/doubletdoublet
Overlap genenone
Upstream geneFaf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359A19.T7 (MSMg01no359_a19.b1)MSMg01-359A19.TJ (MSMg01no359_a19.g1)
ACCAG468558AG468559
length764775
length of high quality
(start - end)		533 (24 - 556)479 (52 - 530)
definitionCHROMAT_FILE: MSMg01no359_a19.b1 PHD_FILE: MSMg01no359_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:28 2005CHROMAT_FILE: MSMg01no359_a19.g1 PHD_FILE: MSMg01no359_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,577,083 - 110,577,273)(110,764,705 - 110,765,183)
sequence
XXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCACTTCTGAGC
CCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGT
TCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAA
GATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCCTATTGACGGTGTCTT
TTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTC
GATCTTACAGAGCAAGCCATTGCTGTTCTGTTCAGGAATCTTTCCCCTGT
ACCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTG
TCTCTGGTTTTATGACAACACACTTTTCTAATCCCTTATTTTGCCTACTC
TCAAGTGAACTTTAGCCTCTGTGTGTCTTATTTCTAGAAAACATTCTATA
ATTCTTCCTACTATCTTTATTTATATTTTTATTCTAGCCTCAACTTTCTA
AATTGTTCCTTTTCCCTAAATAGCCTTGCTGATTAGACTTTAAACAAAAA
TGTTAGAAGATGTTCCAACTGGTAAGATGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATTATAGCCCGAGCTGTGAAGAACTCATATGTCCC
TCCTCCGAAGAAAGGGTACCCAAAATGGGGTCCCTTTTCCCACGCAGTAC
ACTTCCCCCCTTATAAAAAAGGAATTTTTGATTTTCCCAGCGCATTGGTG
GGAGCTGGTGGGGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XACAACTAGGTGTAAATTTACTAATTACACTCTTGTTTCAAAGGAAAGGA
CATTGGATGTGACATCAAAGGAAAGGACAGACATTTCTAGATAAAATAGA
TACAATTTTCACCACAACAAATTGCCCTAAGGACCTAAAATTACAACTAA
TTATCACCATCAATTAGGGCTGAATTTCAGAAAGTCAAATTAGTGTCCTG
GAGAGAGCATGTCATGTTCTACAACAGAGATACAGATGGGGAAGATGATA
GTCCCCTGCCTGCGATCTTTCCCTGATGATGCTTCATTCCGCTTCAAAGT
TCTAAGAGTTAGACTGACAGAGCCTAGACCACTGAGGTAAGACAGCACAA
TGCCTTTTAAAAAGTTCTGAAATATGAAAAATGCTTTCATTGGCACTATC
TTACTATTTTCTCATATTAACCCCGTTGACAGAATGAGATTCATTCATTC
ATTGTACACCTACCATATGTAATTTTCTCTGCCAAGCTCTGAAAAGACAG
CAATAAATACATGAGATACTTCCCTATACAGATATTGAAGATGTGGGCCN
AATACCGTAAATACATATGTCTTAAAATTGCCGCAAAAGCATTGCTATAT
TAAAAGGGGAGGGATTTATTTTTTAAAAAAGGCGCATTTCCTCCCTCAAT
CTGAAAAAATTTTTTTTAAACCTTTTTTGCGAATAACGGCTTGTGCCCTT
AAAAATTATTCTACCACCCCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_a19.b1 MSMg01no359_a19.b1 CHROMAT_FILE:
MSMg01no359_a19.b1 PHD_FILE: MSMg01no359_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:28 2005
         (533 letters)



>mm_chr4_110576541_110577473
          Length = 933

 Score =  369 bits (191), Expect = e-106
 Identities = 191/191 (100%)
 Strand = Plus / Plus

                                                                       
Query: 343 caacacacttttctaatcccttattttgcctactctcaagtgaactttagcctctgtgtg 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 caacacacttttctaatcccttattttgcctactctcaagtgaactttagcctctgtgtg 602

                                                                       
Query: 403 tcttatttctagaaaacattctataattcttcctactatctttatttatatttttattct 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tcttatttctagaaaacattctataattcttcctactatctttatttatatttttattct 662

                                                                       
Query: 463 agcctcaactttctaaattgttccttttccctaaatagccttgctgattagactttaaac 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agcctcaactttctaaattgttccttttccctaaatagccttgctgattagactttaaac 722

                      
Query: 523 aaaaatgttag 533
           |||||||||||
Sbjct: 723 aaaaatgttag 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_a19.g1 MSMg01no359_a19.g1 CHROMAT_FILE:
MSMg01no359_a19.g1 PHD_FILE: MSMg01no359_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:28 2005
         (479 letters)



>mm_chr4_110764505_110765383
          Length = 879

 Score =  895 bits (463), Expect = 0.0
 Identities = 475/479 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaactaggtgtaaatttactaattacactcttgtttcaaaggaaaggacattggatgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 679 acaactaggtgtaaatttactaattacactcttgtttcaaaggaaaggacattggatgag 620

                                                                       
Query: 61  acatcaaaggaaaggacagacatttctagataaaatagatacaattttcaccacaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acatcaaaggaaaggacagacatttctagataaaatagatacaattttcaccacaacaaa 560

                                                                       
Query: 121 ttgccctaaggacctaaaattacaactaattatcaccatcaattagggctgaatttcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttgccctaaggacctaaaattacaactaattatcaccatcaattagggctgaatttcaga 500

                                                                       
Query: 181 aagtcaaattagtgtcctggagagagcatgtcatgttctacaacagagatacagatgggg 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 499 aagtcaaattagtgtcctggagagagcatgtcatgttctacaagagagatacagatgggg 440

                                                                       
Query: 241 aagatgatagtcccctgcctgcgatctttccctgatgatgcttcattccgcttcaaagtt 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 aagatgatagtcccctgcctgcgatctttccctgatgaagcttcattccgcttcaaagtt 380

                                                                       
Query: 301 ctaagagttagactgacagagcctagaccactgaggtaagacagcacaatgccttttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 ctaagagttagactgacagagcctagaccactgaggtaagacagcacaatgccttctaaa 320

                                                                       
Query: 361 aagttctgaaatatgaaaaatgctttcattggcactatcttactattttctcatattaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagttctgaaatatgaaaaatgctttcattggcactatcttactattttctcatattaac 260

                                                                      
Query: 421 cccgttgacagaatgagattcattcattcattgtacacctaccatatgtaattttctct 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cccgttgacagaatgagattcattcattcattgtacacctaccatatgtaattttctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |