Query= MSMg01no359_b08.b1 MSMg01no359_b08.b1 CHROMAT_FILE:
MSMg01no359_b08.b1 PHD_FILE: MSMg01no359_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:30 2005
(459 letters)
>mm_chr4_124409190_124410048
Length = 859
Score = 851 bits (440), Expect = 0.0
Identities = 452/456 (99%), Gaps = 1/456 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtgtggagctaacagagccattccttttcaggaagaatatgaagactccagt 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtgtggagctaacagagccataccttttcaggaagaatatgaagactccagt 263
Query: 64 ggaaatgttgtgaacaagaagacatacgaggatctgaaaagacaagggctgctctagtgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaaatgttgtgaacaagaagacatacgaggatctgaaaagacaagggctgctctagtgc 323
Query: 124 tcggttccctgagaagcctgagaaaagcttccccaaccaaatgttcttaaagactttttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcggttccctgagaagcctgagaaaagcttccccaaccaaatgttcttaaagactttttg 383
Query: 184 ctatgtagtatctaccttgtagaaaccttgcagattgcagagttgagatgtgttttatct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctatgtagtatctaccttgtagaaaccttgcagattgcagagttgagatgtgttttatct 443
Query: 244 ttgttttatattaaaaagatctgtgggaaaataaagccagcccttgttttggatgtgctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 ttgttttatattaaaaagatctgtgggaaaataaagccagcccttgttttggatgtgttg 503
Query: 304 tttctgaaacccaggtttatgaattttttgtttttcttttttgagacagggtttctctgt 363
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttctgaaacccaagtttatgaattttttgtttttcttttttgagacagggtttctctgt 563
Query: 364 atagccctggcttgtcctggaactcactttgtagatcaggttggactcaaactcagaaat 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atagccctggct-gtcctggaactcactttgtagatcaggttggactcaaactcagaaat 622
Query: 424 ccacctgcctctgcctcccaagtgctgggattaaag 459
||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccacctgcctctgcctcccaagtgctgggattaaag 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_b08.g1 MSMg01no359_b08.g1 CHROMAT_FILE:
MSMg01no359_b08.g1 PHD_FILE: MSMg01no359_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:30 2005
(283 letters)
>mm_chr4_124553146_124553828
Length = 683
Score = 540 bits (279), Expect = e-158
Identities = 282/283 (99%)
Strand = Plus / Minus
Query: 1 attatggtccaggcttataaacctgacatgacagcgttaagaaggaatctatgcattggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 attatggtccaggcttataaacctgacatgacagcgttaagaaggaatctatgcattggg 424
Query: 61 aaactggggatggccacactagctcagaatctatactgctgggattagaagcggtgcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaactggggatggccacactagctcagaatctatactgctgggattagaagcggtgcatt 364
Query: 121 aatttttggcgaggagtgagaactgcccagggggtcagagttgtttgtaactatgcctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aatttttggcgaggagtgagaactgcccagggggtcagagttgtttgtaactatgcctct 304
Query: 181 catatgctttcctacaggaggatttatgcaggggagttgctctatgatgtggaagcagct 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cgtatgctttcctacaggaggatttatgcaggggagttgctctatgatgtggaagcagct 244
Query: 241 gtgagatggtgaggaaggggctggaggattctggggtttgatg 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtgagatggtgaggaaggggctggaggattctggggtttgatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
