BAC Information

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BAC

Clone NameMSMg01-359D20
Chromosome4 (Build37)
Map Location 29,066,002 - 29,234,530
singlet/doubletdoublet
Overlap geneLOC100040811
Upstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359D20.T7 (MSMg01no359_d20.b1)MSMg01-359D20.TJ (MSMg01no359_d20.g1)
ACCAG468701AG468702
length763757
length of high quality
(start - end)		543 (24 - 566)474 (54 - 527)
definitionCHROMAT_FILE: MSMg01no359_d20.b1 PHD_FILE: MSMg01no359_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:41 2005CHROMAT_FILE: MSMg01no359_d20.g1 PHD_FILE: MSMg01no359_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,233,992 - 29,234,530)(29,066,002 - 29,066,475)
sequence
XXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCACAGGCCCTATTTCA
AATTTCACTGGGAAATTTAGAAATAGCTCTAAATTTCTCTAGGTAATTTA
GAAATAATTTCATAATAACGCATAATAAAATTCATGAAGATTTTAAAGTA
AAATCCTTTCTATTAAAATTCCCAAGATAGCATTTCTTACAGTAATTCCA
TTGTGTAAGTGGGAAGGCGATTGTCAGTAATTCCCAATGATGTCAATATT
TGAAGAGAAGGGATATCACTGGCTCCTTGTTGCATAGGCATAGATGCCGG
CTGGTTCATCCCCATGGGTGGGGTTCATAGGGAAGGCAAAGTGCATCCTT
ATCCAGTCTGGGACCCAAGTCACTGTGTCCCTGACAGGAGCTATTACTGA
TGATTCTGTTAGCATTTAAAATTTACAAAGAAGACTGTATCTTTCCAGAA
TGTCTCTTTAAAATTTGAGCATTTTTATGTGCGATCCTAAGTACTAATAA
AATCCCAAATAAAACTTAATTCTAAACATGCTCTTTCTTTACAATACACA
TCAGTGTTTGATCTGAGAAAGTTTTAGTCAGATTTTCGNTAAAAGCTTTT
AATAGTATTCAGTGGAACAGACACTGTGATAAACTTACCCCGACTACCGG
AAGAGCCGAGAAGAGAGAGAACTTTGTCAACTTACTGGACCTTAAGTTCA
TCATGAGATTCAGTTTAAACATTGCCCTCCAATCCTATTTTAAAAAGAGG
ACTTGGTACCCAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAGTTAACGCATGCAACTGAAAATGAAACATCTCACCCTGCCACCCTA
TACTCAGGACTCAGAACTGCCAAGTGAACTGTGTGCTGCAATCATATCCT
CCCCGCATGGATCGTCTGTTGCCTAAGTCATCACTGTGAGGAACAGAGTA
GAAGATCATGTTTTCGTCTCTTTCCTGGCTCAAAGATGAGTTCTCACACT
CCATTTTGCTTCATAACGGTTTTCTGGAGGATCAGGCTACATATCTTTGT
GATCCGTAAATGTAACAGAGGTTGAGTGGGCAATCCTCCTTTGATCCCCA
CAGGGCAATTAGCCCGAATGACATTGGACTTGTTTATCAGGGCAAAGACT
CTATAACATGTGGTTCCAGCAATTCTTAGCAGATATCCCCTAGGAAATTC
GAAGCCAAACATTTACAACTTTCACCAAATTAATAATCGTTAGCATTTCT
GAGAAATACTTTGAAATATGGAGTAGTTTAGTGTGAAATAGATTTGTAGG
AATAGACTTTTGCAAAGACTGAACCTCCGTCTCTTCTATATAAAATTAAA
ACCAGGCATTTGTAAGCAAGTAAAGGCTATAATAATCCATATTTTTGTTT
TAAAGAATACAATGCTTTTTTTAATATTTAACTCGGTAAGACTGAAGGTT
ATTAAAGTATATCCTTCCCCGAGAAATTTCGTATCCACTCTTTCTTAATT
ATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_d20.b1 MSMg01no359_d20.b1 CHROMAT_FILE:
MSMg01no359_d20.b1 PHD_FILE: MSMg01no359_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:41 2005
         (543 letters)



>mm_chr4_29233788_29234730
          Length = 943

 Score = 1011 bits (523), Expect = 0.0
 Identities = 535/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccacaggccctatttcaaatttcactgggaaatttagaaatagctctaaatttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaattcccacaggccctatttcaaatttcactgggaaatttagaaatagctctaaatttc 684

                                                                       
Query: 65  tctaggtaatttagaaataatttcataataacgcataataaaattcatgaagattttaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tctaggtaatttagaaataatttcataataacgcataataaaattcatgaagattttaaa 624

                                                                       
Query: 125 gtaaaatcctttctattaaaattcccaagatagcatttcttacagtaattccattgtgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtaaaatcctttctattaaaattcccaagatagcatttcttacagtaattccattgtgta 564

                                                                       
Query: 185 agtgggaaggcgattgtcagtaattcccaatgatgtcaatatttgaagagaagggatatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtgggaaggcgattgtcagtaattcccaatgatgtcaatatttgaagagaagggatatc 504

                                                                       
Query: 245 actggctccttgttgcataggcatagatgccggctggttcatccccatgggtggggttca 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 accggctccttgttgcataggcatagatgccggctggttcatccccatgggtggggttca 444

                                                                       
Query: 305 tagggaaggcaaagtgcatccttatccagtctgggacccaagtcactgtgtccctgacag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tagggaaggcaaagtgcatccttatccagtctgggacccaagtcactgtgtccctgacag 384

                                                                       
Query: 365 gagctattactgatgattctgttagcatttaaaatttacaaagaagactgtatctttcca 424
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 383 gagctattactgatgattctgttagcgtttaaaatttacaaagaagactgtatctttcca 324

                                                                       
Query: 425 gaatgtctctttaaaatttgagcatttttatgtgcgatcctaagtactaataaaatccca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaatgtctctttaaaatttgagcatttttatgtgcgatcctaagtactaataaaatccca 264

                                                                      
Query: 485 aataaaacttaattctaaacatgctctttctttacaatacacatcagtgtttgatctga 543
           ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 aataaaacttagttctaaacacgctctttctttacaatacacatcagtgtttgatctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_d20.g1 MSMg01no359_d20.g1 CHROMAT_FILE:
MSMg01no359_d20.g1 PHD_FILE: MSMg01no359_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:41 2005
         (474 letters)



>mm_chr4_29065802_29066675
          Length = 874

 Score =  855 bits (442), Expect = 0.0
 Identities = 466/474 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaacgcatgcaactgaaaatgaaacatctcaccctgccaccctatactcaggactca 60
           ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agttaacacgtgcaactgaaaatgaaacatctcaccctgccaccctatacccaggactca 260

                                                                       
Query: 61  gaactgccaagtgaactgtgtgctgcaatcatatcctccccgcatggatcgtctgttgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaactgccaagtgaactgtgtgctgcaatcatatcctccccgcatggatcgtctgttgcc 320

                                                                       
Query: 121 taagtcatcactgtgaggaacagagtagaagatcatgttttcgtctctttcctggctcaa 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 taagtcatcactgtgaggaacagagtagaagatcatgttttcatctctttcctggctcaa 380

                                                                       
Query: 181 agatgagttctcacactccattttgcttcataacggttttctggaggatcaggctacata 240
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 381 agatgagttctcacactccattttgcttcataatggctttctggaggatcaggctacata 440

                                                                       
Query: 241 tctttgtgatccgtaaatgtaacagaggttgagtgggcaatcctcctttgatccccacag 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctttgtgattcgtaaatgtaacagaggttgagtgggcaatcctcctttgatccccacag 500

                                                                       
Query: 301 ggcaattagcccgaatgacattggacttgtttatcagggcaaagactctataacatgtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcaattagcccgaatgacattggacttgtttatcagggcaaagactctataacatgtgg 560

                                                                       
Query: 361 ttccagcaattcttagcagatatcccctaggaaattcgaagccaaacatttacaactttc 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccagcaattcttagcaaatatcccctaggaaattcgaagccaaacatttacaactttc 620

                                                                 
Query: 421 accaaattaataatcgttagcatttctgagaaatactttgaaatatggagtagt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accaaattaataatcgttagcatttctgagaaatactttgaaatatggagtagt 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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