BAC Information

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BAC

Clone NameMSMg01-359F05
Chromosome4 (Build37)
Map Location 36,008,943 - 36,179,837
singlet/doubletdoublet
Overlap genenone
Upstream geneMobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132, LOC545600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359F05.T7 (MSMg01no359_f05.b1)MSMg01-359F05.TJ (MSMg01no359_f05.g1)
ACCAG468766AG468767
length756748
length of high quality
(start - end)		533 (29 - 561)379 (59 - 437)
definitionCHROMAT_FILE: MSMg01no359_f05.b1 PHD_FILE: MSMg01no359_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:47 2005CHROMAT_FILE: MSMg01no359_f05.g1 PHD_FILE: MSMg01no359_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,179,308 - 36,179,837)(36,008,943 - 36,009,321)
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGCTTCACAA
TAAAAAATACTTCATATATATATATTGGGACATCCAAAGCATGGCTTATA
ATGTAGAGATGGTTCTGATTCCAATCAGTTATCATGAGACAGTTCTGTGC
TCTGACAAGTAAACAGAATCCTGAATTTCATCTTTGTCCTTTCAGTCTTT
ATATACTTGGAAAAAAGATATAAATGAAAGTCTATAAGAATGGAGATGTC
CAAGGAAGTATATTAAGGCTACCAATGAAGCAAACCTTTATAGAAAAATT
ATGTTGTGTCTCAGAGTATGTGAGCAGCCAGAAGCAGGTCAACTGCTATG
GGTTAGTAGGTTTAATCTTAGACTCAGTGATGACACATAGGTTTAATGAG
TTTCTTTGATTTTGTTCACTTTCAAAAACCAATAACAGTGATGACCCTAA
TGCAGCTGATATGACATTGAGTACTACAATGCTTATAAAACACTTAGCTT
GTACCTAGTCTAATGTCACCAGAACTTATCACATTAATCCTATGAATAAA
GCATACTGGTTGTAATTTTAATATAACATACCAGAGATTGAAAATGGAAA
GCAATAGTGGATTACTTGGGAAATAAGGAAGTTAAAAGATAAATTTACCT
GGCAGAAATTTTCAAACCCAACAAATTTATTCTGGGGAAATATTCCTCCC
CTATAACGGAAAGGGAATTTAAGAAAAAATAGCCGGGTTGGGAAAAAATA
ATTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAACGCCCTTAATTGATAGTGTTGTGTTGTCAATTAAAAGCT
TATAGATTGAATTTGAGCAACTTGCTCAGTCTATAGATGAAGAGCCTAGT
CTCAAGAAAGTGACGTGACAAATCTGAGGGTGTTTGGGTCACAGGAGGAT
CTATGTGAATACCTAAAGGCAAGATGCTCCTACCTCTCCAGTACGAGGTC
TCTAGCATGCTCAGCATGGTGTCTCAACATTATAGATTTCCAATGTGCTT
GATTTTAAAGAACTATGTTCGTTGGTAGTTTTATTTTAGAAAGATACCAA
AGCCAACAAACAGCACACCAGTATTTCTAAGTACACATTTTAAATGAGCA
GAATTTGCTGAAAGCAACAGATGATCTCTCTCACCACTCTCTCCAATTAA
ACCAATACAGACATAAGGAGAAAATGGTCTTAATAGATGGTGACAACACC
AGTGCTTTTACTGTAATATAAATAGCATGTTGCTATTTTGCTGATGCCCA
TTTTTGCATATTCAGNTGCATTATTAGTAGCCACCAACATGAAATAATCT
CTTCGCATATTCATGTAATATTAACCTAAAATTATTTTCATTTTGGTACT
ACCAGGGTTCTAAAGGGGCCCCAAGTAGAATCAGGGAATTTCTTTCTCTT
TTGAATCTCCCCTGGGAAATCCCAAGGATTCTTTCGGTTTTCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_f05.b1 MSMg01no359_f05.b1 CHROMAT_FILE:
MSMg01no359_f05.b1 PHD_FILE: MSMg01no359_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:47 2005
         (533 letters)



>mm_chr4_36179105_36180037
          Length = 933

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaagcttcacaataaaaaatacttcatatatatatattgggacatccaaagca 63
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggaattcaaagcttcacaataagaaatacttcatatatatatattgggacatccaaagca 674

                                                                       
Query: 64  tggcttataatgtagagatggttctgattccaatcagttatcatgagacagttctgtgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tggcttataatgtagagatggttctgattccaatcagttatcatgagacagttctgtgct 614

                                                                       
Query: 124 ctgacaagtaaacagaatcctgaatttcatctttgtcctttcagtctttatatacttgga 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 613 ctgacaagtaaacagaatcctgaatttcatctttgtcctttcagtctttatatagttgga 554

                                                                       
Query: 184 aaaaagatataaatgaaagtctataagaatggagatgtccaaggaagtatattaaggcta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaaaagatataaatgaaagtctataagaatggagatgtccaaggaagtatattaaggcta 494

                                                                       
Query: 244 ccaatgaagcaaacctttatagaaaaattatgttgtgtctcagagtatgtgagcagccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccaatgaagcaaacctttatagaaaaattatgttgtgtctcagagtatgtgagcagccag 434

                                                                       
Query: 304 aagcaggtcaactgctatgggttagtaggtttaatcttagactcagtgatgacacatagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aagcaggtcaactgctatgggttagtaggtttaatcttagactcagtgatgacacatagg 374

                                                                       
Query: 364 tttaatgagtttctttgattttgttcactttcaaaaaccaataacagtgatgaccctaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttaatgagtttctttgattttgttcactttcaaaaaccaataacagtgatgaccctaat 314

                                                                       
Query: 424 gcagctgatatgacattgagtactacaatgcttataaaacacttagcttgtacctagtct 483
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcagctgatatgacattgattactacaatgcttataaaacacttagcttgtacctagtct 254

                                                             
Query: 484 aatgtcaccagaacttatcacattaatcctatgaataaagcatactggtt 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aatgtcaccagaacttatcacattaatcctatgaataaagcatactggtt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_f05.g1 MSMg01no359_f05.g1 CHROMAT_FILE:
MSMg01no359_f05.g1 PHD_FILE: MSMg01no359_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:48 2005
         (379 letters)



>mm_chr4_36008743_36009521
          Length = 779

 Score =  717 bits (371), Expect = 0.0
 Identities = 377/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacgcccttaattgatagtgttgtgttgtcaattaaaagcttatagattgaatttgagc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacgtccttaattgatagtgttgtgttgtcaattaaaagcttatagattgaatttgagc 260

                                                                       
Query: 61  aacttgctcagtctatagatgaagagcctagtctcaagaaagtgacgtgacaaatctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttgctcagtctatagatgaagagcctagtctcaagaaagtgacgtgacaaatctgag 320

                                                                       
Query: 121 ggtgtttgggtcacaggaggatctatgtgaatacctaaaggcaagatgctcctacctctc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgtttggatcacaggaggatctatgtgaatacctaaaggcaagatgctcctacctctc 380

                                                                       
Query: 181 cagtacgaggtctctagcatgctcagcatggtgtctcaacattatagatttccaatgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtacgaggtctctagcatgctcagcatggtgtctcaacattatagatttccaatgtgc 440

                                                                       
Query: 241 ttgattttaaagaactatgttcgttggtagttttattttagaaagataccaaagccaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgattttaaagaactatgttcgttggtagttttattttagaaagataccaaagccaaca 500

                                                                       
Query: 301 aacagcacaccagtatttctaagtacacattttaaatgagcagaatttgctgaaagcaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagcacaccagtatttctaagtacacattttaaatgagcagaatttgctgaaagcaac 560

                              
Query: 361 agatgatctctctcaccac 379
           |||||||||||||||||||
Sbjct: 561 agatgatctctctcaccac 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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