BAC Information

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BAC

Clone NameMSMg01-359G05
Chromosome4 (Build37)
Map Location 109,147,608 - 109,147,874
singlet/doubletsinglet
Overlap geneRnf11
Upstream geneZcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik
Downstream gene4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359G05.T7 (MSMg01no359_g05.b1)MSMg01-359G05.TJ (MSMg01no359_g05.g1)
ACCAG468814AG468815
length761810
length of high quality
(start - end)
278 (23 - 300)331 (59 - 389)
definitionCHROMAT_FILE: MSMg01no359_g05.b1 PHD_FILE: MSMg01no359_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:52 2005CHROMAT_FILE: MSMg01no359_g05.g1 PHD_FILE: MSMg01no359_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCACTATTCCGAGAGGATCCGCGGAATTCGGGGAAGAAC
GGTGGGTAATGTCAGTACTTTATATACTTGAGCTGAGTCCTTAAAGAGGA
TTAAATGTTCACCTGGGCAACCTTGGGGGAAGGGCTCTTAGCATAAAGAT
CACCTGGAGCAAAGACAAAACTATCAACAGCCTGGTTTGGTTAAAATAGA
GGCTTTTGCCAGGCTATCGTATAGATGGTACTTGACTAACATGAGGGGGT
CAGAAAATCAGCTCATATGATCAATTTTTTGCCACGTGATGAGAAACTGG
CTTACACAGGATTGAGAATACACTACACTAGATAATGATGTCACCACATA
ACATCATAGGAGACTGCACAGTCAGAACACTAAACTCTCTTCACGACTAT
ATTAAAGAACTGCATTAAAGTCCACCTGAGAAGCCCACTTACTGTATGAT
CTTACAAAGATCTATTCTGGAGTCTTTGATCATGAGGACTTTTTGTCCCC
CTAGGTCTTTCCCTCCCCTTTTTTATATTTCTCTTCTTCCTCCCACTATT
TTCCTTTACTCCCCCCTTCTTTCCACCTTTTTTGTCCCTTCCCCCTCCCC
CTTTTTTCCCCCTTTTTTTTTTTTTCCCCCCCTTCCACTTTCCTCCCCTC
TTCCCCATCCTCTTCTCATTTTTTTCCCCTTCCCTCTTTTTTCCCTCTTA
TTCCCTATACTTCCTCTTCCCGATCTTACACTCACCTTTTTTTTTCCCCC
ACTTACACCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATTTAAAAATACCTAGACGTTTGGGACTGGAGAGATGGTGCA
GTGGTTAAGAACACTGGGATGCTCTTCCGGAGGACCCAGGTTAGATTCCC
TATACCCACATGGTGGCTCAGAACTGCCTCTAACGTTAGTTCCAGGGTAT
CCAATGCTCTTTTCTGGCTCCATGGGCACTGTTCCCATGTGGTATATAGA
CATATATGCTGGTAAAATATCCATACATATTAAACAAGCAAACAAACTCT
AGAAGTTAAGGCTCAAAATCCAAAGTTATTACCACAAACCAGTGTGTGAA
TTTTCGTATCTTTTTAAAAAGTTTTATGTGTATGGATGCTTTGCTTGCCT
GCGTGACTATGTTTTACTTGCCACGCCCGCTGTTTTTTGTATTCTATCAC
TATTCTCGCTCCCTTTCTTTCCCTCTGCTTCCTCTTTTTTATTGCCCTCT
TTCTTCTTACAAACAATTCCATTTTTTTTCCCACCTTCTTTTTGCTCCTC
CCATTTTCCCTCCTCTTTTCTCCCCCTCCCTTTTCCCCCCCCCTCCCTCC
TTTTTTTCTACCCACTTTTTTTTTTCTTCTTCCCCTTTTTTTTTTTTTTT
TTTCTCCTCCCCCCTCATTCCTTTTTCCCCCCTCCCCTTTTCTCTTCCTC
TATCCCTCCCATCTCCTCTTCCTCTCCTTCTATCTCTTCCACTTTATCCT
TCTCTTCCCTCCCCCTTCCCCCCTTTCTCCCCCCCCCTTTCCCCCTTGTC
CCCCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_g05.b1 MSMg01no359_g05.b1 CHROMAT_FILE:
MSMg01no359_g05.b1 PHD_FILE: MSMg01no359_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:52 2005
         (278 letters)



>mm_chr4_109147397_109148074
          Length = 678

 Score =  485 bits (251), Expect = e-142
 Identities = 263/267 (98%)
 Strand = Plus / Plus

                                                                       
Query: 12  ggaattcggggaagaacggtgggtaatgtcagtactttatatacttgagctgagtcctta 71
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 212 ggaattcggggaagaagggtgggtaatgtcagtactttagatacttgagctgagtcctta 271

                                                                       
Query: 72  aagaggattaaatgttcacctgggcaaccttgggggaagggctcttagcataaagatcac 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aagaggattaaatgttcacctgggcaaccttgggggaagggctcttagcataaagatcac 331

                                                                       
Query: 132 ctggagcaaagacaaaactatcaacagcctggtttggttaaaatagaggcttttgccagg 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctggagcaaagacaaaactatcaacagcctggtttggttaaaatagaggcttttgccagg 391

                                                                       
Query: 192 ctatcgtatagatggtacttgactaacatgagggggtcagaaaatcagctcatatgatca 251
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctatcgtaaagatgggacttgactaacatgagggggtcagaaaatcagctcatatgatca 451

                                      
Query: 252 attttttgccacgtgatgagaaactgg 278
           |||||||||||||||||||||||||||
Sbjct: 452 attttttgccacgtgatgagaaactgg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)