GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTACGCAGTTGAAT
CCTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCACCGTTCCCCA
GCTGAAGAGTTCTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTT
TACGGGAACACTTTATTACCATGACCCGCAGTTCTGGTTCCGGAATGAGG
GATCTTCCTTTTGCCGGTGATGGTAACCGTCCCAGGTTTTCTCGTCCCGG
GATTTCTCGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCGTCCCAGGTCTC
CTCGTCCCGGGTTTCGGCACCAACTCTTACACGCGTTCGCGACCGGCCAG
GAAGAACGCAACAAACCGGAATCTTCTGCGGCAAAGCTTTATTGCTTACA
TCTTCAGGAGCCAGAGAGCAAGAGAGCAAGAAAAAGAACAAGAACAAGAA
AGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGCAAGAAAAAGAACAAG
AAAGCAAGAGAGAGAAAAAGAATGGCAAAACCCCGTGCCTTTTAAGGAGA
ATTATCCTCCGCCTAGGACGGATTACTCCCTGATTGGGTGCAGGCCATCG
TTCCAGTTGTCATTACGAGAAAGGAGAACACATGTCGGGAAAACAGCCCC
GCCGCGGGGCGATTATGTTATTACTAAAAAAAAGCTGCATCGCCTCTTTT
AACATCAAAGGGAGGGGGGTTCCCCCCGTCCAATTTAAAN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAGGCCAGACAATGCTATAGAGTGAAACCCCCATTTCATAAA
ACAAACAAAAAATGCAAAATGTATATGTACATTTCTCTTGATTAATAATT
TTGTGCATCTTTATAAATGTGGTTGATGAGCAATTAGCGTGTTTTGTAAG
ATAAATAAAGCTCACTGGGGAGCATGGATATTGCTCAGTATTAGGTAGTG
CACATGCCTAGCACATGGGCAGTGTTCTGTTCAATCCCCAGCACCACAAG
AAAGCACACACACACACATACACACACACATACAATTCGTCATAGCACAT
ACACACTGTTTATGCAGTTACTCAAAAAGCCAAGAAACATTATCTTTCCC
AAGTGCAGATGTACAAAAGATAATCTCTTTGTCTAAAAGGAAATTTTGAC
ATTTGTTTGTTTGGNTTGGTTTGGTTTTGAGGCAGGGTTTCTCTGTTAGC
TCTGCTTGTCCTCCAACTTGCCTTGAAGAGCAGGCTATCCTGGAACTTGG
AGATTTGTCTGTCTCTACCCTTGGAGTGTTGTGGACTAATAGTCCCATTC
TTCTTGCCCCTGCCCGACCTTTTACATTTTTACCTTAAATTTTTTATCAT
AATGCTTCTTTGCTCTACAATCCAATGATTCTCTTTTTTTCTCCGGACCT
ACCCTTCGCCCCTATTTCTCTCCCATTCCTCTTTTCATTTTTN

Query= MSMg01no359_g11.g1 MSMg01no359_g11.g1 CHROMAT_FILE:
MSMg01no359_g11.g1 PHD_FILE: MSMg01no359_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:53 2005
         (407 letters)



>mm_chr4_10954591_10955397
          Length = 807

 Score =  503 bits (260), Expect = e-147
 Identities = 397/516 (76%), Gaps = 113/516 (21%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagacaatgctatagagtgaaacccccatttcataaaacaaacaaaaaatgcaaa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccagacaatgctataaagtgaaacccccatttcataaaacaaacaaaaaatgcaaa 260

                                                                       
Query: 61  atgtatatgtacatttctcttgattaataattttgtgcatctttataaatgtggttgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtatatgtacatttctcttgattaataattttgtgcatctttataaatgtggttgatg 320

                                                                       
Query: 121 agcaattagcgtgttttgtaagataaataaagctcactggggagcatggatattgctcag 180
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 agcaattagcatgttttgtaagataaataaagctcactagggagcatggatattgctcag 380

                                                                       
Query: 181 tattaggtagtgcacatgcctagcacatgggcagtgttctgttcaatccccagcaccaca 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattaggtagggcacatgcctagcacatgggcagtgttctgttcaatccccagcaccaca 440

                                                                       
Query: 241 agaaagcacacacacacaca------------------------------t--------- 261
           ||||||||||||||||||||                              |         
Sbjct: 441 agaaagcacacacacacacacacacacacacacacacacacacacacacatgcacgcaca 500

                                                                       
Query: 262 ----------------------acacacacacata------------------------- 274
                                 |||||||||||||                         
Sbjct: 501 cacacacaacacacacacatgcacacacacacatatatacatacacacacacaacacaca 560

                                                                       
Query: 275 ---------------------------caattcgtcatagcacatacacactgtttatgc 307
                                      |||||||||||| ||||||||||||||||||||
Sbjct: 561 cacaacacacacatgcacatgcacacacaattcgtcataccacatacacactgtttatgc 620

                                                                       
Query: 308 agttactcaaaaagccaagaaacattatctttcccaagtgcagatgtacaaaagataatc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 agttactcaaaaagccaagaaacattatctttcccaagtgcagatgtacaaaaaataatc 680

                                               
Query: 368 tctttgtctaaaaggaaattttgacatttgtttgtt 403
           ||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctttgtctaaaaggaaattttgacatttgtttgtt 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)