Query= MSMg01no359_n21.b1 MSMg01no359_n21.b1 CHROMAT_FILE:
MSMg01no359_n21.b1 PHD_FILE: MSMg01no359_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:27 2005
(441 letters)
>mm_chr4_92101427_92102267
Length = 841
Score = 513 bits (265), Expect = e-149
Identities = 280/285 (98%), Gaps = 1/285 (0%)
Strand = Plus / Minus
Query: 158 ctcactagcctggacctggccagaaatcctcagggatccacttgtatctgactcttctct 217
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 584 ctcactagcctggacctggccagaaatcctcagggatccacttgtatctgattcttctct 525
Query: 218 tggactcctacgatatccccagctctgactgtttttgcggactcacaaaaaataaaagat 277
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tggactcctacgatatccccaactctgactgtttttgcggactcacaaaaaataaaagat 465
Query: 278 aaaatcatcatacaagggaaaaaatactctacattttaaaaactactctcttttttaatt 337
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaaatcatcatacaggggaaaaaatactctacattttaaaaactactctcttttttaatt 405
Query: 338 aa-ttttttattaatttattttttatgctccatattttatctgactcccattcacccttc 396
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 404 aatttttttattaatttattttttatgctccatattttttctgactcccattcacccttc 345
Query: 397 agctgttccatacttcatacctcttccccacacctgcctccatgt 441
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agctgttccatacttcatacctcttccccacacctgcctccatgt 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_n21.g1 MSMg01no359_n21.g1 CHROMAT_FILE:
MSMg01no359_n21.g1 PHD_FILE: MSMg01no359_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:27 2005
(323 letters)
>mm_chr4_91891135_91891857
Length = 723
Score = 609 bits (315), Expect = e-179
Identities = 321/323 (99%)
Strand = Plus / Plus
Query: 1 agtggccatttggtggtatgaaccatgccttattcaccctttgatcttattaccttaata 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 agtggccatttggtggtatgaaccatgccatattcaccctttgatcttattaccttaata 260
Query: 61 gaagttatacacctaataatcaaggaaatttagaaaaatacatgtcttaaatagaggtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagttatacacctaataatcaaggaaatttagaaaaatacatgtcttaaatagaggtta 320
Query: 121 tatatataattctatatttagcgtacccgatagataagaagtttatattctctggacagt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatataattctatatttagcctacccgatagataagaagtttatattctctggacagt 380
Query: 181 tttcaataaacataaaaatattgtaccattgtataatttgcttatttatgtgactgtaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaataaacataaaaatattgtaccattgtataatttgcttatttatgtgactgtaat 440
Query: 241 acccaaatacagaaaaataaaaactaattcttacaaagaaggctgattgttttcctgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acccaaatacagaaaaataaaaactaattcttacaaagaaggctgattgttttcctgatt 500
Query: 301 ataaatatcagttaactattacc 323
|||||||||||||||||||||||
Sbjct: 501 ataaatatcagttaactattacc 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
